barSeed - Barley Seed Development Database

Probe CUST_22096_PI390587928

Source Contig U35_26740

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22096_PI390587928	Hv_44K_v2	TGTTTGGCAAGTCTACGTCCTTCATCAACTCAATGCCGGCGGCCGCCAACCAAGAACGGT	604	GeneList: darkgrey MasterList: Transferase_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.056	0.147	2.490	4.220	3.003	1.271
Raw	3.747	20.716	313.372	842.846	238.111	98.413

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369485	2776	2e-24	1613 - 1672	100	60 / 60	plus	None
MLOC	MLOC_59327.2	1610	2e-24	1008 - 1067	100	60 / 60	minus	None
MLOC	MLOC_59327.1	2558	2e-24	1013 - 1072	100	60 / 60	minus	None
JLOC1	JLOC1_38605.1	2710	8e-25	1490 - 1549	100	60 / 60	plus
Harvest35	U35_26740	943	3e-25	605 - 664	100	60 / 60	plus

Contig Sequence (943 bp)

>U35_26740 943 Hv_44K_v2
ACGCAATGGCAGGGGACGTGGATCAAGCCGGCCAAGGGCCACCGGAAAGGACACCATCCT
GCAATTCTTCAGGTTATGCTGGATCAACCTAGCAAGGATCCTGAGCTGGGAATGGCGGCG
AGCTCCGACCACCCTCTGGATTTCAGCGCCGTGGACGTGCGCCTCCCGATGCTGGTCTAC
ATTGCCCGGGAGAAGCGGCCTGGGTATGACCACCAGAAGAAGGCGGGCGCCATGAACGTG
CAGCTGCGCGTGTCCGCGCTGCTCTCCAACGCGCCCTTCATCATCAACTTCGACGGCGAC
CACTACATCAACAACTCGCAGGCCTTCCGCGCCGCCATGTGCTTCATGCTCGACCCGCGC
GACGGCGCCGACACCGCCTTCGTCCAGTTCCCGCAGCGCTTCGACGACGTCGACCCCACC
GACCGCTACTGCAACCACAACCGCATGTTCTTCGACGCCACCCTCCTCGGCCTCAACGGC
ATCCAGGGCCCCTCCTTCGTCGGCACCGGATGCATGTTCCGCCGCGTCGCTCTCTACAGC
GCCGACCCTCCACGGTGGCGGTCCGACGACGCCAAGGAGGCCAAGGCCTCGCACAGGCCC
AACATGTTTGGCAAGTCTACGTCCTTCATCAACTCAATGCCGGCGGCCGCCAACCAAGAA
CGGTCCGTCCCGTCACCGGCGACGGTCGGCGAGGCGGAGCTCGCAGACGCGATGACTTGC
GCGTACGAGGACGGCACCGAGTGGGGCAACGACGTTGGGTGGGTGTACAACATCGCGACG
GAGGACGTGGTGACCGGCTTCCGGCTGCACCGGACGGGGTGGCGCTCCACGTACTGCGCC
ATGGAGCCCGACGCGTTCCGCGGCACGGCGCCCATCAACCTCACCGAGCGCCTGTACCAG
ATCCTGCGTTGGTCGGNGGGGTCCCTTGAGATGTTCTTCTCCC

Homology of Contig U35_26740 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g36610.1	885	1e-179	protein\|CSLF9 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed
Brachypodium v1_2	Bradi3g45515.1	872	0.0
Arabidopsis v10	AT3G03050.1	1145	6e-110	\| Symbols: CSLD3, KJK, ATCSLD3 \| cellulose synthase-like D3 \| chr3:687873-691629 FORWARD LENGTH=1145