barSeed - Barley Seed Development Database

Probe CUST_22095_PI390587928

Source Contig U35_26741

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22095_PI390587928	Hv_44K_v2	GGCTACATGGACCTGTTAGAATGTACTACTACTCCCTTTGTTCCTAAATATAAGTTTTTT	966	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355486	2598	2e-24	2447 - 2506	100	60 / 60	plus	ABC25098
JLOC1	JLOC1_6926.6	1776	8e-25	1590 - 1649	100	60 / 60	plus
JLOC1	JLOC1_6926.5	1381	8e-25	1195 - 1254	100	60 / 60	plus
JLOC1	JLOC1_6926.4	1668	8e-25	1482 - 1541	100	60 / 60	plus
JLOC1	JLOC1_6926.3	1647	8e-25	1461 - 1520	100	60 / 60	plus
JLOC1	JLOC1_6926.2	1243	8e-25	1057 - 1116	100	60 / 60	plus
JLOC1	JLOC1_6926.1	1539	8e-25	1353 - 1412	100	60 / 60	plus
Harvest21	ABC25098	1054	3e-25	967 - 1026	100	60 / 60	plus	ABC25098
Harvest35	U35_26741	1054	3e-25	967 - 1026	100	60 / 60	plus

Contig Sequence (1054 bp)

>U35_26741 1054 Hv_44K_v2
CACTCTCCGCCTTCACTCTTTTGCCATTTATGCAGCCAACTATTCGAATCGATCATGCTA
TCAGGTGTGACAAAGTTAAATCGATTGAATTCACTGAAAGTAGAAGATGGCAAGCTTTTT
TACTTAGACCCTCGAGTTATCAACTTTGCATCTTCATATCTGTGAAGTATAAAGCTCGTT
AATGTTATTTTAGTCACAAGTTTCTTTGATCAGCTCAGCACCGAATGCCCATCTTTGGAA
AATCTGCAGTTGGCAGACAGCACTCCTGATTTTCCTGAGATTTCATCAGTCATTGAAGAC
TCTGGAAATAATAAACTGCTTAGTTATAAATCTTCTGATTTGTATTTGCAAACTGCTTAG
TTATAAATGCTTCAAGGACACTTGTTGCGGGTGCACACCCTAAATAGTTCGAACTACATC
AACAGTAATGTGATCTTTCAAATGCCAAGAGCGTAGAATTTTCAGGTCAAGTGAGGCAGG
AGAATGGTGTTTGTCCAATAATTTTTCTCATTTAGCTTGCTTCTTCGAGCACTCTCCTAT
GCTTTAAATTCTTGATCTGAAGCTCAAGGTGGTTGACAACACTCAGCGTTTGCCCTTGTC
TATTTACTTGGCGAAGAGAGGAATTCTTATTGATATGTTTTACTCTTAAAAATTTCAGTA
TGACTGAAGATCAAAAGCAGCCAATTTACACGGCTAAGGGAATATCATTTGATGCCAGCC
ACCTGGCAGTGATCCACTGCACGGAAAAAGAGGACATGCTTCCTGTGTTGAAGGCTATAC
TGCTTGCTGATGCAAGATCTCTCGAGCATATCGGTGTCAGGACAGACTAGACTGTTCCTG
GTTTCCAATAGGAAGATGAGCTCATCGTTCTTCTACATATGGAATGCATCTTAGCGCTCT
GGACATGTGAGACTTAATCTAGCTAGACATTTGGTTGTTGAACGTTGTACTGAATCCTGC
CCTCAGGGCTACATGGACCTGTTAGAATGTACTACTACTCCCTTTGTTCCTAAATATAAG
TTTTTTTTAGAGATTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_26741 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None