barSeed - Barley Seed Development Database

Probe CUST_22088_PI390587928

Source Contig U35_26748

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22088_PI390587928	Hv_44K_v2	GCCCGATCTTATGTATTTAGTGTATACATCATTTGTGTTTGTGTTGTGGTGAATTTATCC	723	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44349.1	2704	2e-24	154 - 213	100	60 / 60	minus	ABC20471
JLOC1	JLOC1_28741.1	2762	8e-25	212 - 271	100	60 / 60	minus
Harvest35	U35_26748	827	3e-25	724 - 783	100	60 / 60	plus

Contig Sequence (827 bp)

>U35_26748 827 Hv_44K_v2
GTTCTGTTCGTGAAGCCGCTCTGTCAAAGCCATTGAGCAGCATGGAGGGTCTACAAGACA
AGAGTAGCGATGATGGTTCAGAGCACTTTTTCATTCCCCTGTCAACAGTTGCTTCAAGGA
AAGATGTGGGTGCTGTGGCAAATCGAAGAAAACAAAGGACAGGTCTACCGTCATCACAGT
CGAAATTGCCCAAGAGCACAGGTGACCTTTACTTCAATCCTGACAGCCCAATGCCTGCAG
CCCCAGCTCTGTCAGGTAAACTGAATGGCCATGACGATCCAAGCAATGCTGCAAACTTCT
TTGATCCAGTCAATGGTCGGTCGTTTATGACGGATGATGCTCTTGATCAAGTGTTCTCCC
CGCCACCTATGTTGGAGCCTTCCTTGTTCCACGACACGTACGCATACGAGGACTTGCTTG
CACCATTATCAGAAACTGATGCGGCTTTAATGGAGCATTAGGCTTTAAGTGTACAATATG
TAATGCTTTAGCCACTGCCTAAAGCTTCAGTGCTTAAGTGCAGCCCAGAGGATTTGATGG
CTTATGTTCAACTGGGGTGAACCCTTTGGACTTGTGCTGGTTAAGTTGCATGCCAGTTGC
CACCAGCTCCTGAGAGGGATCAGGGATGCTGCTGCATCCGATGTTGTGCGATTCTGTTTG
AAAAGAAGGGCGCCAAAAGGTGATGATATGGATGCATGGGATGGTGTGTGCAGTAAAAAA
AATGCCCGATCTTATGTATTTAGTGTATACATCATTTGTGTTTGTGTTGTGGTGAATTTA
TCCTCTTATTCAAGTGCCTGTTTTGATTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_26748 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g22370.1	718	5e-52	protein\|expressed protein
Brachypodium v1_2	Bradi4g39430.1	712	2e-68
Arabidopsis v10	None