barSeed - Barley Seed Development Database

Probe CUST_22086_PI390587928

Source Contig U35_38721

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22086_PI390587928	Hv_44K_v2	TTCTCTGATTCCTCGGCGATGGTCGTCTGCAAATGCCGCAAGGTTACTTCTTGATAATTT	68	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.807	0.770	1.945	2.288	1.013	0.947
Raw	22.362	30.324	73.532	133.244	21.366	22.604

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_8299.1	672	2e-24	116 - 175	100	60 / 60	plus	None
Harvest21	ABC34625	550	3e-25	69 - 128	100	60 / 60	plus
Harvest35	U35_38721	550	3e-25	69 - 128	100	60 / 60	plus

Contig Sequence (550 bp)

>U35_38721 550 Hv_44K_v2
GCTTCGTTCCATCTGTGCGAGATCTGCCGTGCTTCTCCTCTTGCTCCCCGTACCGACTCC
CGATTCTTTTCTCTGATTCCTCGGCGATGGTCGTCTGCAAATGCCGCAAGGTTACTTCTT
GATAATTTCTCCACCTATCCGGCGATGCCCCTGCGATGTGATGCGTGTTCTTTCTGTTGC
GCGTCGACATGTGAGGGGGGATTTTGGATCTGGGCAGGGGAAGTACGCGGTGGCGGATTT
GGCGTTCGCATGGCAACGAGGGTTTATTGCTTCGTCCACCAGGTTCCGGTCTGCGGCGAG
TGTATCTGCTCCCCAGAGCATCAATTATGCGTGGTAAAAAACTATGCTGAATGGGTTGTT
AATTCTGATTATGACTGGCCACAACACTGCTCTTTGTGTAATTTGGTTCTAGAAGCTGCA
AGTGAAGAAACTACACGATTGGGTTGCCTCCATGTGATGCACACAAAATGCTTGATATCA
CATGTCCAAAGTTTTCCGGCACAAACAGCACCAGCAGGATTTGTCTGCCCCTCATGTTCG
ATTCCTATAT

Homology of Contig U35_38721 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g20600.1	361	5e-62	protein\|zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi3g25380.1	365	5e-65
Arabidopsis v10	None