barSeed - Barley Seed Development Database

Probe CUST_22085_PI390587928

Source Contig U35_38723

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22085_PI390587928	Hv_44K_v2	CTGCCACAATGAGCGTACTGTTTGGAGAAAATCTGTCACAACTTATAAATAAGCATTTTT	80	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69140.1	2103	2e-24	1881 - 1940	100	60 / 60	plus	ABC00275 ABC00309 ABC00398 ABC00501 ABC00925 ABC01000 ABC34629 ABC37572 ABC37604 ABC37614 ABC47640
JLOC1	JLOC1_45803.2	1855	8e-25	1611 - 1670	100	60 / 60	plus
JLOC1	JLOC1_45803.1	2127	8e-25	1883 - 1942	100	60 / 60	plus
Harvest21	ABC34629	613	3e-25	81 - 140	100	60 / 60	minus	ABC34629
Harvest21	ABC01000	462	3e-25	355 - 414	100	60 / 60	plus	ABC01000
Harvest21	ABC00851	2008	3e-25	82 - 141	100	60 / 60	minus
Harvest21	ABC00309	625	3e-25	38 - 97	100	60 / 60	minus	ABC00309
Harvest21	ABC00275	567	3e-25	436 - 495	100	60 / 60	plus	ABC00275
Harvest21	ABC00092	2014	3e-25	1865 - 1924	100	60 / 60	plus
Harvest35	U35_38723	613	3e-25	81 - 140	100	60 / 60	minus
Harvest35	U35_13829	2028	3e-25	1877 - 1936	100	60 / 60	plus
Harvest35	U35_13704	793	3e-25	662 - 721	100	60 / 60	plus
Harvest35	U35_48831	463	6e-22	120 - 179	97	58 / 60	minus

Contig Sequence (613 bp)

>U35_38723 613 Hv_44K_v2
TTTTTTTTTTTTTTTTTACAGAATTAAAATATTATTTGAGCAGAAAGGAATGCAGTAGGA
CAAGCTCGTCTTAGATAAAAAAAAATGCTTATTTATAAGTTGTGACAGATTTTCTCCAAA
CAGTACGCTCATTGTGGCAGACGCAGCAAACCACCTAGAGCTAATAGTTTATTCAGAGTA
GCAATAGCCTGGCCGGCTGCTTCACAGTAACCAAAACGACAAACGGAAGTCAGAACGAAT
TCCACAGACGGAACAGCGACAGCAAAAATCATCTTATCACTCGCACAGCACCCCGCCCTC
CTCCAGAGAATCCTCCTCCGCCCGCCATGCGAGCAGGTTGGCAAGCTTGCCTTCCTTGAC
CAGAGGGTGGCCGCTCTCCTCCAGAGAATCCTCCTCCGCCCGCCATGCGAGCAGGTTGGC
AAGCTTGCCTTCCTTGACCAGAGGGTGGCCGCTCTCCACATTCTCGCCCTCGAAGCAGTG
GAAGACGGACCTGGGCGACCCGGCGGAGACAGCAACCTCTTCATTCGCGGTAAAGCTCTG
GTAGATGAGGACGCCCCCGCAGGGGAGCTCCTGCTCCACGATGTTGTTGCAGTCGTATGC
CTCGGCGTCGAGC

Homology of Contig U35_38723 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None