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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_22084_PI390587928Hv_44K_v2TTTGGTATGGTTCATGAATCATGATCTCAGTTTGATAGTGGACGTCTGTGTCTGAAAAAA11GeneList: white
MasterList: Transcription_factors_Function_Probe_Module



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.0591.3041.4581.2920.4520.548
Raw 183.771367.534350.565491.36760.60878.933



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_17254.122199e-221458 - 151210055 / 55minus ABC34631
MLOCMLOC_17254.28999e-22196 - 25010055 / 55minus ABC34631
MLOCMLOC_17254.38689e-22107 - 16110055 / 55minus ABC34631
JLOC1JLOC1_11914.18635e-22115 - 16910055 / 55minus
Harvest21ABC346315263e-2512 - 7110060 / 60minusABC34631
Harvest35U35_387255263e-2512 - 7110060 / 60minus



Contig Sequence (526 bp)

>U35_38725 526 Hv_44K_v2
TTTTTTTTTTTTTTTTTCAGACACAGACGTCCACTATCAAACTGAGATCATGATTCATGA
ACCATACCAAAAGCATGCATAGTGTTGCCTGAACATTTTCATGCATATGTAGGAGCACCT
GTATGTTAAGCCACCATGTTGGTGAAGCCCATCTCCTCGAGGAGCTCATCCACCTGCTGC
AACTCCACCGGGGGCAAGCCGGTCAAGAGATCGTCGAGCTGTCCATCTGGGGTGATGCTG
TCCGGGAAGAAGCCAAGCGCTGGCGGCTCCACGAATTCGTTGAGGTTCATGGCCGACACC
TCACCGTCATCCGCAGCGGCGGCCGAGCGTGGTTGCTTGAAGTTGGTTTCGGCTGCCGCA
CCGTGCATCCTGACAGCCGTTGAGTCGTATGCTCCGAAGATGTCCTCGGCGGCGCCGAAG
GTGCGGAGCCACTGGTCGGCTCGCCGCACCGGGTCCCAGATCTGCGCCGAGTACTTCCCG
CGATACCGGTGCACGCCGACGTGCCCCGACCGAGTGCCCGATGCCG



Homology of Contig U35_38725 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None