barSeed - Barley Seed Development Database

Probe CUST_2207_PI390587928

Source Contig U35_38941

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2207_PI390587928	Hv_44K_v2	GTGGTGTGAACCTTTTATCGTATGATGGATGGATAAATAATGGAGCTGAATAAAATTCAG	336	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.390	0.445	0.795	1.458	1.284	1.355
Raw	8530.583	15209.120	24099.567	66604.267	21258.633	24349.467

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359422	1045	2e-24	971 - 1030	100	60 / 60	plus	ABC34930 ABC39144
JLOC1	JLOC1_10158.2	1194	8e-25	945 - 1004	100	60 / 60	plus
Harvest21	ABC34930	413	3e-25	337 - 396	100	60 / 60	plus	ABC34930
Harvest21	ABC02818	1028	3e-25	962 - 1021	100	60 / 60	plus
Harvest21	ABC02817	1111	3e-25	1022 - 1081	100	60 / 60	plus
Harvest21	ABC39144	461	6e-22	31 - 90	97	58 / 60	minus	ABC39144
Harvest35	U35_38941	413	3e-25	337 - 396	100	60 / 60	plus
Harvest35	U35_861	1085	3e-25	996 - 1055	100	60 / 60	plus
Harvest35	U35_860	1115	3e-25	1022 - 1081	100	60 / 60	plus

Contig Sequence (413 bp)

>U35_38941 413 Hv_44K_v2
GGGCTTGCAGGGAACCTGATCGCCGGGTGGGCGCCGAAGGTGAACCCGTAAGCTCCCCCG
CCCGCCGCTCCGAGAACACCACCCGTTGTGCCAGTAGTGATGGCAGTAGTAAGGCCTCGT
CTGTAGCTTGGGCGCATGGTCGATCTGGGTTTGGAATAATGCGAGCGAGCCTTTGCTGTG
TGCTCTGCCTGTCGCAAGCGCGCACTTGCTGTGAGTTAGTGTTATGTGTGTGTTCTGGTG
CAAGCAAGGGTGCATGTGTTGTGCCTGTCGCAAGCGCGCACTTGCTGTGAGTTAGTGTTA
TGTGTGTGTTCTGGTGCAAGCAAGGGTGCATGTGTTGTGGTGTGAACCTTTTATCGTATG
ATGGATGGATAAATAATGGAGCTGAATAAAATTCAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_38941 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None