barSeed - Barley Seed Development Database

Probe CUST_22079_PI390587928

Source Contig U35_14771

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22079_PI390587928	Hv_44K_v2	TCGGTCGTGGAAGCATGCATGCATGCATTCTTCCCTCTTATCGGCAAAGGATTAATTTAA	404	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.690	4.482	1.257	0.842	0.460	0.409
Raw	85.852	118.128	25.941	28.599	3.192	3.106

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC01841	802	3e-25	405 - 464	100	60 / 60	plus
Harvest35	U35_14771	802	3e-25	405 - 464	100	60 / 60	plus

Contig Sequence (802 bp)

>U35_14771 802 Hv_44K_v2
GCCACTACGACGGGCTCATGAACTTCATGCACCGCGACGAGGAGGTCGACTACTTCCCCT
CCAGGTTCGACCCCGCCAAGCACGCGCCGCGCTACCCCATCCCGGCGCGCGCGCTCAACG
GCCGCCGCGAGAAGGCATGCATTGACAAGGAGAACAACTTCAAGCAGCCAGGGGAGAGGT
ACCGCTCCATGGACCCGGCAAGGCAAGAGCGATTCATCAACAGATGGATCGATGCGCTGT
CCGACCCCCGCCTCACCCACGAGATCAAGGCCATCTGGCTCTCCTACTGGTCTCAGGCTG
ACAAGTCTCTTGGCCAGAAGCTTGCGAGCCGTCTCAGCGCGAAGCCGAGCATGTAATCAT
CAGTCCTCAATGGCGCACGTACGTGAGCAAATCAGATATCTGCTTCGGTCGTGGAAGCAT
GCATGCATGCATTCTTCCCTCTTATCGGCAAAGGATTAATTTAAGTACCAAATGCTACAT
CAGCTACTTCATTTTACCGAGCCTATTTTGCAAAACAAGGACATACGTACGATTCTACAC
CACATTATGCGCATTGTCGTCTGTCATTCATGTAATAATGTGTACAAGAGCCCGTCTATC
CTCATACTTCATGATTATTGTAAGGTGAATGCATCTTGAATAATGAACCAAATTACGAAT
AAGTTTAAAAAAAAAGCCTTGTTTGGAACCATAATAGATTATGATAATCTGGATTATGAA
GATGGATTATATAATCTGGTTTATAAAAAAAATTTAGGTGGACATGTTTGGAGGTCAGAT
TATATAAAAAAAAAAAAAAAAA

Homology of Contig U35_14771 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g03910.1	493	1e-67	protein\|catalase domain containing protein, expressed
Brachypodium v1_2	Bradi1g76330.1	493	1e-71
Arabidopsis v10	AT4G35090.1	492	5e-56	\| Symbols: CAT2 \| catalase 2 \| chr4:16700937-16703215 REVERSE LENGTH=492