barSeed - Barley Seed Development Database

Probe CUST_22078_PI390587928

Source Contig U35_14772

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22078_PI390587928	Hv_44K_v2	GTTACAGTAAACTGCATGTACTCTAGCTTAAACTAAAGTGGGTGCTTCGAGCTTAAAAAA	1719	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.274	3.619	1.163	0.731	0.320	0.538
Raw	214.278	225.394	64.617	69.521	9.472	17.804

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC01845	1387	3e-25	1316 - 1375	100	60 / 60	plus
Harvest21	ABC01848	778	2e-22	93 - 147	100	55 / 55	minus
Harvest21	ABC01840	680	2e-22	469 - 523	100	55 / 55	plus
Harvest21	ABC37511	483	8e-21	43 - 97	98	54 / 55	minus	ABC37511
Harvest21	ABC01842	1852	8e-21	1720 - 1774	98	54 / 55	plus
Harvest35	U35_14772	1781	3e-25	1720 - 1779	100	60 / 60	plus
Harvest35	U35_14775	1048	2e-22	837 - 891	100	55 / 55	plus
Harvest35	U35_14773	1491	2e-22	1316 - 1370	100	55 / 55	plus

Contig Sequence (1781 bp)

>U35_14772 1781 Hv_44K_v2
GGCAGTGAGAGTGAGTGAGTGAGTGAGCGAGCGACACTCCCCACCCCCAGCTTAGCTACG
CTACTTCACTCACTCGAGGAAGGATGGATCCCTGCAAGTTCCGGCCGTCGAGCAGCTTCG
ACACCAAGACGACGACGACGAACGCCGGGCAGCCGGTGTGGAACGACAACGAGGCGCTCA
CGGTGGGGCCGCGCGGCCCGATCCTGCTGGAGGACTATCACCTGCTGGAGAAGATCGCCC
ACTTCGCGCGGGAGCGCATCCCGGAGCGCGTCGTGCACGCGCGCGGCGCCTCCGCCAAGG
GCTTCTTCGAGTGCACCCACGACGTCACCGGCCTCACCTGCGCCGACTTCCTCCGCGCGC
CCGGGGCGCGCACGCCGGTCATCGTCCGCTTCTCCACCGTGATCCACGAGCGCGGCTCGC
CGGAGACCATCCGTGACCCGCGCGGGTTCGCCGTCAAGTTTTACACGCGCGAGGGCAACT
GGGACCTGCTCGGCAACAACTTCCCCGTCTTCTTCATCCGCGACGGCATCAAGTTCCCCG
ACGTCATCCACGCCTTCAAGCCCAACCCAAAGTCCCACGTGCAGGAGTACTGGCGCGTCT
TCGACTTCCTCTCCCACCACCCGGAGAGCCTCCACACCTTCTTCTTCCTCTTCGACGACG
TCGGCATCCCCACCGACTACCGCCACATGGACGGCTTCGGCGTCAACACCTACACCTTCG
TCTCCCGCGCCGGCAAGTCCCACTACGTCAAGTTCCACTGGCGCCCCACCTGCGGCGTCA
GCTGCCTCATGGACGACGAGGCAACCCTCGTTGGCGGCAAGAACCACAGCCACGCCACGC
AGGACCTCTACGACTCCATCGACGCCGGCAACTTCCCCGAGTGGAAGCTCTTCGTGCAGG
TCATCGACCCCGACGAAGAGGACCGCTTCGACTTCGACCCGCTCGACGACACCAAGACAT
GGCCAGAGGACCTCGTCCCCCTCCAGCCCGTGGGCCGCCTCGTGCTCGACCGCAACGTCG
ACAACTTCTTCAACGAGAACGAGCAGCTCGCCTTCGGCCCCGGCCTCGTCGTGCCCGGGA
TCTACTACTCCGACGACAAGATGCTGCAGTGCAGGGTGTTCGCATACGCCGACACGCAGC
GCTACCGCCTGGGGCCAAACTACCTGATGCTCCCCGTCAACGCGCCCAAGTGCGGCTTCA
AGAACAACCACTACGACGGCGCCATGAACTTCATGCACCGCGATGAGGAGGTGGACTACT
ACCCGTCTCGTCACGCGCCGCTCCGGCAAGCCGAGCCGGCCAGCTTCCCCGTGCCGACGA
GGCCCGTGGTGGGGAGGAGGGAGAAGACGAGGATCAAGAAGGAGAACGACTTCGTGCAGC
CCGGGGAGAGGTACCGCAGCTGGGCGCCCGACCGCCAGGACAGGTTCGTGCGCCGCTTCG
CCGACGCGCTCGCGCACCCCAAGGTCAGCCACGAGCTGCGTGTCATCTGGATCGACTTCC
TCTCCAAGTGTGACAAGTCGTGCGGGATGAAGGTGGCGAACCGCCTCAACGTGAAGCCAA
GCATGTGATGGATGTATCTGCCATGGATGATGGATGGACCATTCTGTGTAAACTTTGTGC
TATATCATGAACCAGCCAGCAATAAGGGACCATGCATGCCAGCTACTGTGGATCATGTGG
TCGAATAGATACCATGCTACTAATAAGTTACCATCTTTTGTTACAGTAAACTGCATGTAC
TCTAGCTTAAACTAAAGTGGGTGCTTCGAGCTTAAAAAAAA

Homology of Contig U35_14772 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g02400.1	493	protein\|catalase isozyme A, putative, expressed
Brachypodium v1_2	Bradi3g01470.1	497
Arabidopsis v10	AT4G35090.1	492	\| Symbols: CAT2 \| catalase 2 \| chr4:16700937-16703215 REVERSE LENGTH=492