barSeed - Barley Seed Development Database

Probe CUST_22077_PI390587928

Source Contig U35_14773

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22077_PI390587928	Hv_44K_v2	ACAGTAAACTGCATGTACTCTAGCTTAAACTAAAGTGGGTGCTTCGAGCTTATGAAAAAA	1318	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.005	4.300	1.074	0.778	0.283	0.574
Raw	229.060	247.997	57.032	71.455	8.189	18.363

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_26735.1	357	6e-21	256 - 311	98	55 / 56	plus
Harvest21	ABC01848	778	5e-23	89 - 144	100	56 / 56	minus
Harvest21	ABC01840	680	5e-23	472 - 527	100	56 / 56	plus
Harvest21	ABC37511	483	2e-22	39 - 93	100	55 / 55	minus	ABC37511
Harvest21	ABC01845	1387	6e-22	1319 - 1378	97	58 / 60	plus
Harvest21	ABC01842	1852	2e-21	1723 - 1778	98	55 / 56	plus
Harvest35	U35_14773	1491	3e-25	1319 - 1378	100	60 / 60	plus
Harvest35	U35_14775	1048	5e-23	840 - 895	100	56 / 56	plus
Harvest35	U35_14772	1781	2e-21	1723 - 1781	97	58 / 60	plus

Contig Sequence (1491 bp)

>U35_14773 1491 Hv_44K_v2
GGAATTCGGACGAGGCCGAGCAGGTCCCAGTTGCCCTCGCGCGTGTAGAACTTGACGGCG
AACCCGCGCGGGTCACGGATGGTCTCCGGCAACAACTTCCCCGTCTTCTTCATCCGCGAC
GGCATCAAGTTCCCCGACGTCATCCACGCCTTCAAGCCCAACCCAAAGTCCCACGTGCAG
GAGTACTGGCGCGTCTTCGACTTCCTCTCCCACCACCCGGAGAGCCTCCACACCTTCTTC
TTCCTCTTCGACGACGTCGGCATCCCCACCGACTACCGCCACATGGACGGCTTCGGCGTC
AACACCTACACCTTCGTCTCCCGCGCCGGCAAGTCCCACTACGTCAAGTTCCACTGGCGC
CCCACCTGCGGCGTCAGCTGCCTCATGGACGACGAGGCCACCCTCGTTGGCGGCAAGAAC
CACAGCCACGCCACGCAGGACCTCTACGACTCCATCGACGCCGGCAACTTCCCCGAGTGG
AAGCTCTTCGTGCAGGTCATCGACCCCGACGAAGAGGACCGCTTCGACTTCGACCCGCTC
GACGACACCAAGACATGGCCAGAGGACCTCGTCCCCCTCCAGCCCGTGGGCCGCCTCGTG
CTCGACCGCAACGTCGACAACTTCTTCAACGAGAACGAGCAGCTCGCCTTCGGCCCCGGC
CTCGTCGTGCCCGGGATCTACTACTCCGACGACAAGATGCTGCAGTGCAGGGTGTTCGCA
TACGCCGACACGCAGCGCTACCGCCTGGGGCCAAACTACCTGATGCTCCCCGTCAACGCG
CCCAAGTGCGGCTTCAAGAACAACCACTACGACGGCGCCATGAACTTCATGCACCGCGAT
GAGGAGGTGGACTACTACCCGTCTCGCCACGCGCCGCTCCGGCAGGCCGAGCCGGCCAGC
TTCCCCGTGCCGACGAGGCCCGTGGTTGGAAAGAGGGAGAAGACGAGGATCAAGAAGGAG
AACGACTTCGTGCAGCCCGGGGAGAGGTACCGCAGCTGGGCGCCCGACCGCCAGGACAGG
TTCGTGCGCCGCTTCGCCGACGCGCTCGCGCACCCCAAGGTCAGCCACGAGCTGCGTGTC
ATCTGGATCGACTTCCTCTCCAAGTGTGACAAGTCGTGCGGGATGAAGGTGGCGAACCGC
CTCAACGTGAAGCCAAGCATGTGATGGATGGATCTGCCATGGATGATGGATGGACCATTC
TGTGTAAACTTTGTGCTATATCATGAACCAGCCAGCAATAAGGGACCATGCATGCCAGCT
ACTGTGGATCATGTGGTCGATTAGCTACCATGCTACTAATAAGTTACCATCTTTTGTTAC
AGTAAACTGCATGTACTCTAGCTTAAACTAAAGTGGGTGCTTCGAGCTTATGAAAAAAAA
AAAAAAAAAGTATTCCCTTTGCTTCTGCCGTTTCGAAGTCGCCTTATTGTTGATCACCAA
AAAAAAAAAAAATCGAGAACGGTCGATCACCTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14773 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g02400.1	493	protein\|catalase isozyme A, putative, expressed
Brachypodium v1_2	Bradi3g01470.1	497
Arabidopsis v10	AT1G20630.1	492	\| Symbols: CAT1 \| catalase 1 \| chr1:7146812-7149609 FORWARD LENGTH=492