barSeed - Barley Seed Development Database

Probe CUST_22064_PI390587928

Source Contig U35_26757

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22064_PI390587928	Hv_44K_v2	TAAATTAGAACAGCTGAGTGATAACTAATGTTTGGATCAGAATGACTCCAAGTATGGTTG	237	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11943.2	2754	3e-21	1699 - 1758	97	58 / 60	minus	ABC09198
Harvest21	ABC21958	359	3e-25	238 - 297	100	60 / 60	plus
Harvest35	U35_26757	360	3e-25	238 - 297	100	60 / 60	plus

Contig Sequence (360 bp)

>U35_26757 360 Hv_44K_v2
ATTTGAGCACCGCAACAGTAAGGGGTGCAATTATGGCCCTCCATATGAGTGGCAAGTTTA
TAGCTCTCTGAACGGATGTTATGGTATACCGTGGGTTCACTACAAAGGCCGTCAAGGGGA
CTATTATGTGCTGGTAATGGATATACTAGGCCCTAGCCTTTGGGATGTTTGGAATTCTTT
AGGGCAAACGTAAGATGGATGCACCTATTTGCTTTCTGTTTCTGTCTTATCTGTTTTTAA
ATTAGAACAGCTGAGTGATAACTAATGTTTGGATCAGAATGACTCCAAGTATGGTTGCTT
GCATCGCTGTAGAGGCTATATCTATCCTTGAGAAACTTCATGCAAAGGGGTTTGTTCATG

Homology of Contig U35_26757 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None