barSeed - Barley Seed Development Database

Probe CUST_22061_PI390587928

Source Contig U35_38730

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22061_PI390587928	Hv_44K_v2	AAAGATGATAAGTAAGGGACTTAACCCACGATCCATACGTACAACATGATGATGAAGTCG	520	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22011.1	2227	7e-23	1638 - 1698	98	60 / 61	plus	None
MLOC	MLOC_22011.3	2129	7e-23	1550 - 1610	98	60 / 61	plus	None
MLOC	MLOC_22011.2	2763	7e-23	1550 - 1610	98	60 / 61	plus	None
JLOC1	JLOC1_15260.2	2184	4e-23	1546 - 1606	98	60 / 61	plus
JLOC1	JLOC1_15260.1	2248	4e-23	1546 - 1606	98	60 / 61	plus
Harvest21	ABC34637	580	3e-25	521 - 580	100	60 / 60	plus
Harvest35	U35_38730	580	3e-25	521 - 580	100	60 / 60	plus

Contig Sequence (580 bp)

>U35_38730 580 Hv_44K_v2
GGAATGCATGACCGGTACTCTCCAGACCTGGGCTCAACACAGCCCTGCTGCTGGCATGGT
GCAATGTAAGGAACCTGGTGGAGGCTGGGCGGGTTTGGAATGAGATGCTGGAGAAGGGGA
TGAAGCCAGATGTTGTTGTGCACAACACAATGATTGAGGGGTTGCTTCGTGGGCAGAGGC
GGCCTGAGGCTGTGAAGATGTTCGAGCTGATGAAGGCAAAGGGGCCTCCCCCAAATGTGT
GGACTTACACAATGTTGATTCGAGACCATTGTAAGCGGGGAAAGATGGACATGGCAATGC
GGTGTTTTGAGCAGATGCAAGAGGATGGGTGCCAGCCGGGTGTTGCTACCTATACGTGCT
TGCTTGTGGGATATGGGAATGCAAAGCGAATGGATAGAGTGGCGGCAATGTTGGAGGAAA
TGTCACAGAAAGGGTGCCCCCCTGATGGCCGAACGTACAATGCGCTGATTAAGCTGCTCA
CGAATAGGAATATGCCAGATGATGCAGCAAGGATATACAAAAAGATGATAAGTAAGGGAC
TTAACCCACGATCCATACGTACAACATGATGATGAAGTCG

Homology of Contig U35_38730 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g28720.1	633	8e-110	protein\|PPR repeat containing protein, expressed
Brachypodium v1_2	Bradi2g28390.1	650	8e-110
Arabidopsis v10	AT3G62470.1	599	2e-65	Pentatricopeptide repeat (PPR) superfamily protein \| chr3:23106600-23108399 REVERSE LENGTH=599