barSeed - Barley Seed Development Database

Probe CUST_22059_PI390587928

Source Contig U35_38732

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22059_PI390587928	Hv_44K_v2	ATCATGCTATTGATGTGAATGTTTGTGCTTGTGCTCTCCTGTTGTTTGGAGATATCTAAA	14	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.991	1.392	1.528	1.195	0.454	0.335
Raw	439.443	951.793	922.934	1110.152	153.193	121.677

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59001.1	4805	2e-23	3302 - 3359	100	58 / 58	minus	ABC34639 ABC49708
MLOC	MLOC_59001.2	3437	2e-23	1919 - 1976	100	58 / 58	minus	ABC34639 ABC49708
MLOC	MLOC_58999.1	5833	2e-23	4315 - 4372	100	58 / 58	minus	ABC34639 ABC49708
JLOC1	JLOC1_38366.1	1580	1e-23	62 - 119	100	58 / 58	minus
Harvest21	ABC34639	595	3e-25	15 - 74	100	60 / 60	minus	ABC34639
Harvest35	U35_38732	595	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (595 bp)

>U35_38732 595 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGATATCTCCAAACAACAGGAGAGCACAAGCACAAACATTCAC
ATCAATAGCATGATTAATCCGTACAATGCGAGTATGTCCATATGAGATACTACGAAGTGA
CAATAGGCTCAGTAGTGACATTACAGTAAGCAACTGAATGTAGACGGCTGTTCCAGGTAA
AAATTGTGACTTATTTCGCTACAATCATCAAAAGAAAAGAGGTGGATGAACCGATATCGG
CGATGGCAATGGTCGGCGTGCCAATGTCACCCTGGAGTTCAGTCCAAACCCTTCACCGTT
GGGTGTTGCCTCCCACCCTGGGGGTAGTGGCCTCCTCCAGGCACGGCAGTTGGGCACGCC
AACATAAACTCGGTTCTCCTCCACTCCGCAGTTCCCCACGTCCACACAAGCCACGGTGCT
CCTCCCGGCAATGTCCACGAACAAGGTGTAAGCCCCAATGTTGTCCACTTCCTCCCACAT
CATGTGGACCAAATCAAGAGCGTACACACCGACCTTGTTCACCCTAGGTACACGGAACAC
CACAGGGCCCAAATTTGCTTCAAGCATGAAGAGCACCAGCAGCAGCCGATCCCCG

Homology of Contig U35_38732 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None