barSeed - Barley Seed Development Database

Probe CUST_22044_PI390587928

Source Contig U35_14789

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22044_PI390587928	Hv_44K_v2	GGTGCATGGAAGCTGCGTATGGTGTTTAATAAAATGGTTCGATGACAACTATTGAGAACT	581	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.011	0.011	0.538	1.573	2.940	3.769
Raw	281.136	425.255	37698.967	141889.000	105016.733	150141.333

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1565.1	986	2e-24	736 - 795	100	60 / 60	plus	ABC01816
JLOC1	JLOC1_955.1	885	8e-25	696 - 755	100	60 / 60	plus
Harvest21	ABC01816	733	3e-25	618 - 677	100	60 / 60	plus	ABC01816
Harvest35	U35_14789	699	3e-25	582 - 641	100	60 / 60	plus

Contig Sequence (699 bp)

>U35_14789 699 Hv_44K_v2
GCACGAGGATGGCATCTAAGATGGTCGTCTACGCGGTGCTCCTCCTCCTGCCCATGCTAA
CGGCGACTTCTGTGGCAGTTGATCAAGGCAGCATGGTGTCCAACTCACCCGGCGAATGGT
GCTGGCCAGGAATGGGTTACCCGGTGTACCCGTTCCCGCGTTGTCGTGCACTGGTGAAGA
GCCAGTGCGCCGGCGGCCAGGTCGTCGAGAGCATCCAGAAGGACTGTTGTCGCCAGATCG
CCGCCATCGGCGATGAATGGTGCATATGTGGTGCGCTAGGCTCAATGCGGGGGAGCATGT
ACAAGGAGCTCGGTGTGGCGTTGGCAGACGATAAGGCGACGGTCGCGGAAGTGTTCCCTG
GGTGTCGGACGGAAGTGATGGATCGCGCCGTGGCGAGCCTCCCAGCGGTATGCAATCAGT
ACATCCCTAATACTAATGGCACCGACGGTGTTTGCTACTGGCTCTCGTACTATCAGCCAC
CCAGGCAAATGAGTAGTAGATGATGTGATTGCATGACATCTTGCAAGCTCGGTAATAAAT
GCATGCGCATGTACCTTCCAATGCAAAACATGCAAGTGGTCGGTGCATGGAAGCTGCGTA
TGGTGTTTAATAAAATGGTTCGATGACAACTATTGAGAACTAAAAAAAAAAAAAAAAAAA
AAAAAAAAGTCCTCGTGTTACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14789 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g54000.1	175	3e-69
Arabidopsis v10	None