barSeed - Barley Seed Development Database

Probe CUST_22043_PI390587928

Source Contig U35_26760

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22043_PI390587928	Hv_44K_v2	TCGAGCACTTCCTCCACCCATACCCAAAGGATTCGGACAAGATCATGCTCGCCAAGCAGA	133	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366536	2695	2e-24	1442 - 1501	100	60 / 60	plus	ABC43162
MLOC	AK354639	2996	2e-24	1858 - 1917	100	60 / 60	plus	ABC43162
MLOC	MLOC_68213.2	2560	2e-24	1097 - 1156	100	60 / 60	minus	ABC43162
JLOC1	JLOC1_45111.1	2917	8e-25	1405 - 1464	100	60 / 60	plus
Harvest21	ABC25789	428	3e-25	134 - 193	100	60 / 60	plus
Harvest35	U35_26760	429	3e-25	134 - 193	100	60 / 60	plus

Contig Sequence (429 bp)

>U35_26760 429 Hv_44K_v2
CGGCTCCGGTACATCGACCACCAGCTCCGGCAGCAGCGCGCGCTGCAGCAGCTGGGCATG
ATGCAGAGCAGCGCGTGGCGCCCTCAGCGAGGACTCCCCGAGCGCTCCGTCTCCATCCTT
CGTGCATGGCTCTTCGAGCACTTCCTCCACCCATACCCAAAGGATTCGGACAAGATCATG
CTCGCCAAGCAGACCGGCCTCACCAGGAGCCAGGTGTCGAACTGGTTCATCAACGCGAGG
GTGAGGCTGTGGAAGCCGATGGTGGAGGAGATGTACCTGGAGGAGACCAAGGAGCATCAG
CAGCAGCAGGACGGCGGCGACGACAAGGACAGGCCGTCCGGGTCCGGCCCCGCCGGAGGA
AAGAGCAGCAGCCACGCGGACGGCGTGGACGACGGCACTCCGAGGTCCATGTCCATGTCC
AGAGCGGTG

Homology of Contig U35_26760 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g06020.1	679	1e-52	protein\|homeobox domain containing protein, expressed
Brachypodium v1_2	Bradi4g25020.1	423	8e-53
Arabidopsis v10	None