barSeed - Barley Seed Development Database

Probe CUST_22041_PI390587928

Source Contig U35_26762

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22041_PI390587928	Hv_44K_v2	TAGATGACTCTGAACTGTTACTCGGGTTTGTGAGAGAGGTATTGGAGATCACAAACGGCA	504	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13316.1	2234	2e-24	1651 - 1710	100	60 / 60	minus	ABC25491
MLOC	MLOC_13316.2	1802	2e-24	1262 - 1321	100	60 / 60	minus	ABC25491
JLOC1	JLOC1_9002.1	1802	8e-25	482 - 541	100	60 / 60	plus
Harvest21	ABC24337	649	3e-25	505 - 564	100	60 / 60	plus
Harvest35	U35_26762	649	3e-25	505 - 564	100	60 / 60	plus

Contig Sequence (649 bp)

>U35_26762 649 Hv_44K_v2
GCAATAGCTCGCCTCGTCTCCTCTTCGCCCTAACTCGCCGGCGTCCGCTCCCGCCCGCCG
CCCCCATGCTCCCCCTAATACGCCGCCTCCCTACCGCTCCTTCCCGCCTAGCCGCCCTCG
CACTCCGCCGACCACACCATCGAGCTGCGGCGACGACGCCGACAACGACACCCGCGATAC
CCTCCTCCCGTCTTGCGGGCTCGCCGCCCGCAGAGAGTCCAGCGGCGGATCAGGGGAGCG
AGTTGGAGCCCCGACCTGACCCCCTCGACCGGGACTGGGGCTCGACGCTGTCCGTAGCGG
ACCTCACAGAGGTTGCCGGGATCCTCCGGCGGTTGCGCGACGAGCAGATCAGTCTGGGCC
TGAGCACCTTCAATCTGCTGCTGAAGCGAGCGTGCGAAGCGGACGACTTCGCGCTCTTCG
CCAAGGTATTCAGACACTTGCTGCTCTCCAAAGCTGCTCCCGACTTGACTTCCTACATGT
GTGTCGCCAGGGCCATTGGGGGTCTAGATGACTCTGAACTGTTACTCGGGTTTGTGAGAG
AGGTATTGGAGATCACAAACGGCAGAGGTCCCACGGTGGCGAATCGCATTGTTTTCGCCG
TGGGTACATACGGGCACCTCGATAAATGCTTGATCGTTTTCGAGGAGCT

Homology of Contig U35_26762 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None