barSeed - Barley Seed Development Database

Probe CUST_2203_PI390587928

Source Contig U35_38948

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2203_PI390587928	Hv_44K_v2	CCTGAACTGGGTGTTGTTCATTATCCCCTGGAATCAAGTCATCTAATAAAATGTCATGTA	567	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.238	3.083	2.473	0.815	0.192	0.190
Raw	11686.530	24135.637	16655.700	9109.583	717.323	778.045

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_38754.1	530	8e-25	415 - 474	100	60 / 60	plus
Harvest35	U35_38948	630	3e-25	568 - 627	100	60 / 60	plus

Contig Sequence (630 bp)

>U35_38948 630 Hv_44K_v2
TACTGCCGGGGAAAATCCAAACACACAACCCAGAAAGCAGTGTTAGTTCGAGTAGACAAT
TAAATCTCACCTGAAGATGTCTTCTGGTTCGTCGTCTCGGAGCACCTCGCCGAGCTCCGA
CTCGGAGTGGAGCAAGAAGGAGAACAAGATGTTCGAGGAGGCGCTCGCCTACTACGGCGT
GGGCGCCCCCAACCTCTGGGAGAAGGTGGCCAGCGCCATGGGGGGCACCAAGTCCGTCGA
GGAGGTGCGCCGCCACTTCCAGCTCCTCGTCGACGACGTCAACAGCATCGAGCACGGCCG
CATCCCTTTCCCCAAGTACAAGACCCAGGGCTTCTGGACCTAATAAAAGGATGAAGCAGT
GTAAGCTCCAGTGGACAGTGAACAAGGTGTACAAACTAGATCTCTTAAGAATGGGCTGAT
GTTCTAGGAAGAAGCAAGGGAATCTAGCATTGGTTAGAATAACAGGAAGGAAATCAGCTA
GTATTGTCTATTGTGTGCACAAAGTATTATTAGGTTGTTTCCAAGGTTAAGTCTGTCTCC
ATGTTGTCGTAGATTCTCGTCTACATTCCTGAACTGGGTGTTGTTCATTATCCCCTGGAA
TCAAGTCATCTAATAAAATGTCATGTAAAC

Homology of Contig U35_38948 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None