- Probe CUST_22036_PI390587928
- Source Contig U35_26767
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22036_PI390587928 | Hv_44K_v2 | AATCTAGTCTCCTGATCTTGTCTCTCAATCCCGTAGATCACTTCCAGAGTAGCTAGCTAG | 48 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.184 | 0.153 | 0.756 | 2.346 | 1.388 | 3.226 |
| Raw | 3.323 | 3.466 | 29.774 | 147.205 | 29.635 | 76.360 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK369653 | 865 | 2e-24 | 28 - 87 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_78360.1 | 483 | 2e-24 | 180 - 239 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_52225.1 | 298 | 8e-25 | 180 - 239 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC24234 | 401 | 3e-25 | 49 - 108 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_26767 | 402 | 3e-25 | 49 - 108 | 100 | 60 / 60 | plus |
Contig Sequence (402 bp)
>U35_26767 402 Hv_44K_v2 CCCCGGGGCTGCAGGAAATTCGGCACCAGCACACACACTCCACACAACAATCTAGTCTCC TGATCTTGTCTCTCAATCCCGTAGATCACTTCCAGAGTAGCTAGCTAGCCACCTGCCCGG ATTAGCCATGTCCTGCTTCGCCGTGCACACCTCCTCGTCGTCGAGGATAAGCGGCAGCAG GCAGCCGTGGCGGTGGTGGCGCAAGTGCGCTGGCCTCGCCGCCGCCGCGCACACCAAGCT CCGCCGCACCGTCCTACGCGTCCGGTGGTCGGCCACGGGGCGGCTCGGCGGCCACCGTCG GCGCGCGCCGGCGCCGCCCCTGCCGTCCGTGCAGCGCGGGGACCACATGAGCTTCGCGCC GGTCTACGTGGACGAGCTCTACAGCCAGCCCAAGGGCCTCAG
Homology of Contig U35_26767 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |