barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_22035_PI390587928Hv_44K_v2GTGTATTGCTGCTTGCCTCCAAAAGAAGAATAGAAGAAACTATGTTTCTGCTGTTTGCAG884GeneList: tan
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.2550.7832.0631.8920.7771.016
Raw 30.361154.297336.943486.29468.39398.079



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC227609443e-251 - 6010060 / 60minusABC22760
Harvest35U35_267689443e-25885 - 94410060 / 60plus



Contig Sequence (944 bp)

>U35_26768 944 Hv_44K_v2
TGCAGGAATTCGTCACGAGGCGACGGAGTACCAAGCCCTGGAAATTGCCAGCCGTGTCGA
GGCATCAGTCTACGTGTGGCGCCGGAGGGTTCCTGCGAAACCGGTGAACGGCTTAGGCCG
CACCGCCAGCGCAAGGTCCTGGAGCATGGTGAAAGACATGTTGATGGATTCAGAGAAGAG
GGAGCTGCTGGCGGAGCGAGCAGAGGGCCTCTTGATATGCCTGAAGCAGAGGTTCCCTGC
ACTGACGCAGACAAGCCTGGACATGAGCAAAATCCAGTACAACAAGGACGTGGGCAAGTC
GATCTTGGAGAGCTACTCGAGGGTTCTCGAGAGCCTGGCTTCGAACATCGTCGCGCGCAT
CGACGACCTTCTCAACATCGACGAGCTGAACAGGCACGTGGAGCAACTGTCAACGGGTGA
AGCGGACCTGAAGATGGCTTGCGGCAGGGTCGTGGTGCCACCCTACCAGCAGGTGCCTGC
CTCGGGCGCACCGTTTGTGACGGCTTACACCACGCCTAGCTTCTCCCCGGGGCGACTGTC
GAGCCCGAGGACCTCGCTCTCTGCCGGCAGACGGTCTCACGGCAACAAGGTTGCCGCCGC
CGCCACGAAGAAAGCCTTGACGGACCATCTCGGCCCGGAGGTCAGGGGGATGATCATCGT
GAACCGGAGCACGATGATCGATGTCTCGACGACTACGGATATGTAAGCTAGGAGGCCAGT
GGACTGCTCGTAGAATTGCCAAGGGGCGGGCACCAGCCTGCCTGCCAGTCTCTCTGTGTG
TACATGTGTCCTTTATTTGTGCTCGCCTTCTTACTGTATTTTGAACTCTTTAGTGCTAAG
CTATGGAGTACCGCTTCTTCTTCTTTCTGCGAGAAGAAGCTGCTGTGTATTGCTGCTTGC
CTCCAAAAGAAGAATAGAAGAAACTATGTTTCTGCTGTTTGCAG



Homology of Contig U35_26768 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g62990.15472e-86protein|ATROPGEF7/ROPGEF7, putative, expressed
Brachypodium v1_2Bradi2g54980.15501e-106
Arabidopsis v10None