barSeed - Barley Seed Development Database

Probe CUST_22031_PI390587928

Source Contig U35_38743

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22031_PI390587928	Hv_44K_v2	CTGTTGCAAGTAACATAGATGCCAACTTTATGAAGGTTGTCTCAAGTGCTGTCATTGCTA	561	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55868.1	1542	2e-24	630 - 689	100	60 / 60	plus	ABC20105
MLOC	MLOC_55868.2	1563	2e-24	855 - 914	100	60 / 60	minus	ABC20105
MLOC	MLOC_55868.4	1346	2e-24	776 - 835	100	60 / 60	minus	ABC20105
MLOC	MLOC_55868.3	1559	2e-24	851 - 910	100	60 / 60	minus	ABC20105
JLOC1	JLOC1_36076.1	1494	8e-25	545 - 604	100	60 / 60	plus
Harvest21	ABC34654	621	3e-25	562 - 621	100	60 / 60	plus
Harvest35	U35_38743	621	3e-25	562 - 621	100	60 / 60	plus

Contig Sequence (621 bp)

>U35_38743 621 Hv_44K_v2
GCGCCGACGCCGCCCGCCGCGCCACCGCCGTCGCCAAGTACCGCGCCAGCCTCCTCGCCT
TCCGGGAGCACTACTCCCTCGTGCGAGCAGGGGAAGAGAACCTGAAGAAGGCTAAGAAGG
AGCGTGAGATAACCGATGGGCATGTCAAGGCGTTTCAGTGCGCTGGACAGATTGTGGGGG
AGGTGCTGCGCCCGGTTGGCGGCGAGCGCTTTATTGTCAAGCTTAGGAGTGGTCCTCGAT
ACCTAGTCAACTGTCGCAATAAGTTGAACAAGGAGAAGTTGAAAACAGGCACGCGTGTGT
GTCTTGACCTAAGCACGCTTACAATCGTGCGCGTACTTCCGCGTGAGGTGGACCCTTTAG
TGTTCAACATGCTTCATGAGGATCCAGGGAATGTCAGCTTCTCTGCTGTTGGAGGGCTAT
CTGACCAGATCAGGGAAATTAGGGAGACCATCGAACTTCCGCTCATGAACCCTGAACTGT
TTCTCCGAGTTGGTATTACGCCACCCAAGGGAGTGCTCCTCTACGGCCCACCTGGAACTG
GGAAGACACTGCTGGCTAGGGCTGTTGCAAGTAACATAGATGCCAACTTTATGAAGGTTG
TCTCAAGTGCTGTCATTGCTA

Homology of Contig U35_38743 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10640.1	401	2e-91	protein\|26S protease regulatory subunit, putative, expressed
Brachypodium v1_2	Bradi1g36400.2	401	2e-93
Arabidopsis v10	AT5G43010.1	399	2e-91	\| Symbols: RPT4A \| regulatory particle triple-A ATPase 4A \| chr5:17248563-17251014 REVERSE LENGTH=399