barSeed - Barley Seed Development Database

Probe CUST_22025_PI390587928

Source Contig U35_14792

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22025_PI390587928	Hv_44K_v2	GTCCACTGACCACTGTATCTTGTATTGCTCTTCGGTAATATAGTCGTCTTGCTCAAAAAA	633	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.567	1.234	0.624	0.945	1.503	2.650
Raw	4.360	19.566	8.662	20.577	11.530	22.561

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_17075.1	768	4e-23	624 - 680	100	57 / 57	plus
Harvest21	ABC01830	704	3e-25	634 - 693	100	60 / 60	plus	ABC01830
Harvest35	U35_14792	706	3e-25	634 - 693	100	60 / 60	plus

Contig Sequence (706 bp)

>U35_14792 706 Hv_44K_v2
GTTCTAGATCGCGAGCATCAGGCAATCACAAACGCCGTTCAAGCAGCCACACAACGCTTC
AAGTTGAGATTCGTTCAAGTAGCAAGGCAGAAAGCAATGGCTTCCGGTCAGCAGGAGAGG
TCGCAGCTGGACCGCAAGGCCCGCGAGGGAGAGACCGTCGTCCCCGGCGGCACCGGCGGG
AAGAGCCTCGAGGCGCAGCAGAACCTCGCCGAAGGGCGCAGCCGTGGCGGGCAGACACGC
AGGGAGCAGATGGGGCAGGAGGGTTACAGCGAGATGGGGCGCAAAGGCGGACTGAGCAGC
AATGACGAGTCCGGCGGCGAGCGCGCTGCGAGGGAGGGCATCGACATCGACGAGTCCAAG
TTCAAGACTAAGTCTTAGATGATGAATCGACCAGTGCGTACGTAGCCTAGCAAGCAAGAC
GACTCTGCTTAGGTCGGCCGTTGGTTTACCCTAGTGTCCATGCACCGAATAATGTAGTAG
TTCAGGCGCACGTAGGCGATCGTACGTAGTATGGTCATGTGTGCTTCGTAGAATCGTAGC
TGGTAGTCAGTTGGTACTCTACGGTGAGTCGCGTCAGGTTAAGTCGGAAGTGTGCTGTGG
CTGGTACCCCACTGGGCTCAGTAGTGTCACAGTGTCCACTGACCACTGTATCTTGTATTG
CTCTTCGGTAATATAGTCGTCTTGCTCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14792 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None