- Probe CUST_22024_PI390587928
- Source Contig U35_14793
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22024_PI390587928 | Hv_44K_v2 | CCTGGTAAAACAATTTTCTGTAGCCATGATGAAAATTGGAAAAGTAGCACCTTGTTTCAA | 348 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.449 | 0.667 | 0.703 | 1.719 | 2.078 | 3.447 |
| Raw | 97.580 | 245.967 | 217.012 | 858.116 | 345.398 | 626.972 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK354966 | 785 | 2e-23 | 357 - 414 | 100 | 58 / 58 | plus | ABC01836 ABC31614 ABC41300 |
| MLOC | MLOC_35328.1 | 344 | 9e-22 | 66 - 123 | 98 | 57 / 58 | plus | None |
| JLOC1 | JLOC1_22821.1 | 221 | 5e-22 | 133 - 190 | 98 | 57 / 58 | plus | |
| Harvest21 | ABC31614 | 420 | 3e-25 | 346 - 405 | 100 | 60 / 60 | plus | ABC31614 |
| Harvest21 | ABC01835 | 529 | 4e-24 | 344 - 401 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_14793 | 423 | 3e-25 | 349 - 408 | 100 | 60 / 60 | plus |
Contig Sequence (423 bp)
>U35_14793 423 Hv_44K_v2 GAGGGTCGCCTCAGCGGCCACGGCCTGGAGCGGGCCGGGAGCCGGGAGCGGGCAGCCACG GCACAGGCGGCTGCGGCCACGACCTTGAGAGGGCCGGGCGCGGCCATGGCCTCGCACGGG CGGCGGACGGGCAGTGCAGCGCGGGCGGCTGCAACCACGACCTCGAGCGAGCCGGGCGCG GCCATTGCCTGGCGCAGGCACGAGCACGGCGGTCAGTCGAGGCGACGGCCGGCGGCAGGG ACGAAGCCGCTGGAGCCGGCGAATTGGTCCAGCAGGAACTGAAGCCACGTGATTCCACTT GCCATGGATTCCTTCGTCCGCCGTCCAGCGTCAAGGCAAGATTATGTTCCTGGTAAAACA ATTTTCTGTAGCCATGATGAAAATTGGAAAAGTAGCACCTTGTTTCAAAAAAAAAAAAAA AAA
Homology of Contig U35_14793 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |