barSeed - Barley Seed Development Database

Probe CUST_22012_PI390587928

Source Contig U35_30729

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22012_PI390587928	Hv_44K_v2	GTTCACTTGTGCATTGCAATCATTCATCATTTTTGTGAAAAGACGCCTACATTTCTGATA	436	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.824	1.581	1.041	0.852	0.370	0.374
Raw	953.088	1292.905	748.980	976.863	149.329	161.677

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375969	1212	2e-24	1131 - 1190	100	60 / 60	plus	ABC30767
MLOC	MLOC_10830.2	1952	2e-24	1789 - 1848	100	60 / 60	plus	ABC30767
MLOC	MLOC_10830.1	2340	7e-23	2284 - 2340	100	57 / 57	plus	ABC30767
JLOC1	JLOC1_7118.1	1030	8e-25	843 - 902	100	60 / 60	plus
Harvest21	ABC30767	510	3e-25	437 - 496	100	60 / 60	plus	ABC30767
Harvest35	U35_30729	510	3e-25	437 - 496	100	60 / 60	plus

Contig Sequence (510 bp)

>U35_30729 510 Hv_44K_v2
TGAAAAGCTCTTCCCGTTTCTACAAGCCTGGCTCTATGTGAAGGATCACCGCAACCTGAT
GCGCTGGTTTAAGAGTGTGGGTGCAGCCGTCAGCGAGCCAAAGCCCGAGTAAGATGACAA
GAACGCCGCCTCTGCTCAAGATCACCCGTAAGGTGCTACTGCAGAAGTGTTTGCCTGTTG
GGAGAACCCAGAGGATTGAGAGTAGTGCTAGTAGTATAAAGTTGGCTTGGGTACAAGATA
GTGCCATCAACTAATATATATTGCCTTGTCTTCAGTTTTGACTGTACCCCTTGGAGTTTT
GGAGGATGCATGATAGTGCCGCTGGAGGGCGAAATTGGATGGGTGTTCATCGCATGTCGT
TAGCCTCTGTGATCCGCTGCCGTATCACATCCTGAGGTGGTTGTTAGGTTCTCAATTATT
CCACGACCATGGGCCAGTTCACTTGTGCATTGCAATCATTCATCATTTTTGTGAAAAGAC
GCCTACATTTCTGATAAAAAAAAAAAAAAA

Homology of Contig U35_30729 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None