barSeed - Barley Seed Development Database

Probe CUST_22010_PI390587928

Source Contig U35_590

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22010_PI390587928	Hv_44K_v2	CTCATGGATAATGCATCGTTTGTTGGTTTTGGCTGTTCAATATATTATCTCGTGAATCAA	1227	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54589.1	1564	6e-24	1460 - 1518	100	59 / 59	plus	ABC01023 ABC01031 ABC43064 ABC49901
JLOC1	JLOC1_35141.3	967	3e-24	821 - 879	100	59 / 59	plus
JLOC1	JLOC1_35141.2	1108	3e-24	962 - 1020	100	59 / 59	plus
JLOC1	JLOC1_35141.1	1532	3e-24	1386 - 1444	100	59 / 59	plus
Harvest21	ABC49901	241	2e-21	23 - 82	97	58 / 60	minus	ABC49901
Harvest35	U35_590	1326	3e-25	1228 - 1287	100	60 / 60	plus

Contig Sequence (1326 bp)

>U35_590 1326 Hv_44K_v2
TCGAGCACTGTTGGCCTTCTCATCTCTAGCCTGCGCCGCCGCCTCCACCGCACCCCCCGA
AAACCCTAGCGCTCGCTTCGCCACACCACCATGGCCGGCGCGCAGGAGTCCCTCGTGTAC
GCCGGTGTGATGCGTGGCCACAACGACGTGGTCACGGCCATCGCGACACCCATCGACAAC
TCGCCCTTCATCGTCTCCTCTTCCCGCGACAAGTCGCTGCTCGTCTGGGACCTCACCAAC
CCCATCCAGGCCACCCAGGACACCAGCTCCGAGTACGGCGTCCCCTTCCGCCGCCTCACA
GGCCACGGCCACTTTGTCCAGGACGTCGTCCTCAGCTCCGACGGCCAGTTCGCGCTCTCC
GGATCCTGGGACGGCGAGCTCCGCCTCTGGGACCTCTCCACCGGGGTCACCACCCGCCGC
TTCGTCGGCCACGAGAAGGACGTCCTCTCCGTCGCCTTCTCTATTGACAACCGACAGATC
GTCTCCGCGTCCCGCGACCGCACCATCAAGCTGTGGAACACCCTCGGTGAGTGCAAGTAC
ACCATCGGCGGTGACCTTGGAGGCGGCGAGGGCCACACCGGCTGGGTGTCCTGCGTCCGT
TTCTCCCCCAACAACTTCGCCCCGACCATCGTCTCGGGCTCATGGGACCGCTCCGTCAAG
GTCTGGAACCTCACCAACTGCAAGCTCCGCTGCACTCTTGATGGCCATGGTGGGTATGTT
AGTGCCGTTGCGGTCAGCCCAGACGGTTCACTCTGCGCCTCTGGTGGCAAGGATGGCGTC
ACTTTGCTGTGGGATTTGACCGAGGGCAAGAGACTCTACTCGCTGGATGCGGGATCCATT
ATCAACTCACTTTGTTTCTCGCCGAACCGCTACTGGCTCTGCGCGGCGACACAGGATTCC
ATCAAGATCTGGGATCTTGAGTCAAAGCACATCGTGCAGGACCTTAGGCCCGAGGTCCCA
GTCTCCAGCAAACAGATGCTCTACTGCACTTGCTTGAGCTGGAGCGCGGATGGCAGCACT
CTCTATGCTGGTTACACTGATGGAACCATTCGCATCTACAAGATCTCTGGGTTCAGCTAC
TCTAGCTAGATTATGTATCTTGTTTTAGTGGCCTCTGTTCCGGTAAAACGGCTGTGGTAT
CTTCTTTTTTTTGACTGTCTTGAGGCGTAATATCTGCCTTGGTACTTATGCTTAATTTAC
TATCTGTGTCTTAGCCGCAGTCATGATCTCATGGATAATGCATCGTTTGTTGGTTTTGGC
TGTTCAATATATTATCTCGTGAATCAAAAAAAAAAAAAAAAAAGTTTCTGCTTGATAAAA
AAAAAA

Homology of Contig U35_590 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g49290.1	335	0.0	protein\|WD repeat-containing protein, putative, expressed
Brachypodium v1_2	Bradi2g46840.1	332	0.0
Arabidopsis v10	AT3G18130.1	326	2e-162	\| Symbols: RACK1C_AT \| receptor for activated C kinase 1C \| chr3:6211109-6212371 REVERSE LENGTH=326