barSeed - Barley Seed Development Database

Probe CUST_2200_PI390587928

Source Contig U35_14991

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2200_PI390587928	Hv_44K_v2	TGACAGTGGTAGTAGTACATGTATGTCTGATCGATCCTGTTTAATGTATGATTGATGGAA	608	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372798	3007	6e-24	2938 - 2996	100	59 / 59	plus	ABC01664 ABC35126 ABC39899
MLOC	MLOC_18401.2	2908	6e-24	2804 - 2862	100	59 / 59	plus	ABC01664 ABC35126 ABC39899
MLOC	MLOC_18401.1	2967	6e-24	2863 - 2921	100	59 / 59	plus	ABC01664 ABC35126 ABC39899
JLOC1	JLOC1_12736.1	3173	3e-24	2872 - 2930	100	59 / 59	plus
Harvest21	ABC01662	626	3e-25	552 - 611	100	60 / 60	plus
Harvest21	ABC35126	332	1e-24	19 - 77	100	59 / 59	minus	ABC35126
Harvest21	ABC01665	2844	1e-24	2671 - 2729	100	59 / 59	plus
Harvest35	U35_14991	683	3e-25	609 - 668	100	60 / 60	plus
Harvest35	U35_14994	3120	1e-24	2945 - 3003	100	59 / 59	plus

Contig Sequence (683 bp)

>U35_14991 683 Hv_44K_v2
GGGTGACATGATGCTCGTGGGAGACGATCCATGGGAGGAATTCTGCAGCATGGTGCGCAA
GATATGCATTTACACCAAGGAGGAGGTCCAGAAGATGAACTCGAAACCATCTGACGCAAG
AAAGGAGGAAGGTTCAGTGGAAGGTGACGGCGCAACCGAGAAGGCTCATCTTCCCGTGTC
AAGCGATCTAAATTCTAGCCAACTAGGTTGTGTTAAGGCCGACTGAGGCACGGGGCGAGG
TATCGCCGAGGGGGGCTAGGTCCCCCAGAAAAGAAGTAACAACCCCTGAAGTATGTATGG
TCTATTGCTATTGGTGATCACCACCACCTCCCCTCCCCTCCCCTCCCCCTTCAGATGCAA
CAACCAACCCTTTGGGTGTTACTGTAGTTACTACTAGGAAATGTAGAGACTTTGGTGCGC
CGTCGCGCGTCGGATGGTTTGCTCTTTGGCAGAGAAAGATCCAGGGCCAAGGCTTGTCCC
TTGCTTGGATGCTCAATTGGTGATCCGATCCCTGATGTAAATATTTGTGTATGTAGGTAG
CGTTATTAGTAGTGTCTGTATTAACCATCCAGGAACCAGCAGTGTCTTGTGTCTATCTAT
TCCGGGAGTGACAGTGGTAGTAGTACATGTATGTCTGATCGATCCTGTTTAATGTATGAT
TGATGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14991 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None