barSeed - Barley Seed Development Database

Probe CUST_22004_PI390587928

Source Contig U35_42701

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22004_PI390587928	Hv_44K_v2	TTCCTTGGTGTATCACCGGATACAAAACATCCGAATGATGCTGGTGTCGCATTAGCTAGA	516	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72597.2	1732	2e-24	909 - 968	100	60 / 60	plus	None
MLOC	MLOC_72597.1	1476	2e-24	1152 - 1211	100	60 / 60	plus	None
MLOC	AK369441	3388	6e-24	933 - 991	100	59 / 59	plus	None
JLOC1	JLOC1_48290.1	1662	8e-25	1084 - 1143	100	60 / 60	plus
Harvest21	ABC38533	612	3e-25	517 - 576	100	60 / 60	plus
Harvest35	U35_42701	612	3e-25	517 - 576	100	60 / 60	plus

Contig Sequence (612 bp)

>U35_42701 612 Hv_44K_v2
TGAGGGCGGCACGAGGCCATGGGCGACCTCCACGCGAGCGCAAATGGCTGGAGGTTTCCG
TACGAGGAGGAGACGTCGAACGGCTTCGTGACTGCTGAGGCGGCTGGTTATTCGGAGTAT
GATAAAGAGATGTTCAGGCGCACAATGCTGGCGCATGAGGCTGTGTTTAGACAGCAGGTG
TATGAATTGCATCGGGTTTACAGAGTACAGAGAGACCTGATGAAGCAGCATCAGAGCAGA
GAAATGCATGCATGCTCGACACTGGAAGATGCGTCACAGAGAAATTCACCATCACAAATT
CCACCACATGGTGCCAACATGATTGGTACTGCTGCTCTGAACAATGAGAAAAGCCACTCG
TCGAAGTTCCCTAGGGAAGGCAGTGTCCAGTCCTCGCCGAATGGATTTCCCTCAAGTGAT
GCTACTTTACCCACCAAACAAGGCAGGTTTGACCTTGAGCTCGGAGCTGAGCATTATGTT
GAAGATGACCATGCATCGGACAGTAAGCCTATAGATTTCCTTGGTGTATCACCGGATACA
AAACATCCGAATGATGCTGGTGTCGCATTAGCTAGAGCGCAAGGCTTTGGGGATGTTCGG
TCATAATAGTGC

Homology of Contig U35_42701 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g08000.1	983	2e-68
Arabidopsis v10	None