barSeed - Barley Seed Development Database

Probe CUST_22003_PI390587928

Source Contig U35_16439

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22003_PI390587928	Hv_44K_v2	TGTAGTACATTCTGCAATATCACGCCAATTTGTGAATTTCTCGTGCAATTTGGATCCAAA	1834	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6172.1	2436	3e-21	1562 - 1618	98	56 / 57	plus	ABC02724 ABC15665 ABC49964
MLOC	MLOC_6172.4	1421	3e-21	1329 - 1385	98	56 / 57	plus	ABC15665
JLOC1	JLOC1_4008.1	1620	2e-21	1527 - 1583	98	56 / 57	plus
Harvest21	ABC15665	552	3e-25	479 - 538	100	60 / 60	plus	ABC15665
Harvest35	U35_16439	1908	3e-25	1835 - 1894	100	60 / 60	plus

Contig Sequence (1908 bp)

>U35_16439 1908 Hv_44K_v2
GCTGTTCCTGAAGAAGAAGGCCGACGAGCTTGACAGGGAAATGGGGCTGATACGCACGCA
GGAGGAGACGGGGAGGCATGTCAGGATGCTCACCCATGAGATCAGGAGCACGCTTGACAG
GCACACCATCCTCAAGACTACTCTGGTTGAGCTAGGGAGGACGCTGGGTCTGGAGGAGTG
TGCCTTGTGGATGCCGTCCCGGAGCGGTTCGAGCCTTCAGCTAACGCACACTCTGCGACA
CCAGATACCCGCTGGCTCATCTGTGCAGATTAACCTCCCTGTTGTCAACCAAGTCTTCAG
TAGCAACCGAGCAATCATCGTGCCTCATACGTCTCCCTTGGCAAGGATCCGCCCTGTTCA
AGGGCGGTATGTCCCACCGGAGGTAGCTGCTGTGAGAGTCCCCCTGCTGCATCTTTCAAA
CTTCCAGATAAATGACTGGCCTGAGCTTTCGGCGAAAAGCTACGCGATTATGGTTTTGAT
GCTCCCGTCTGATAGCGCGAGGAAATGGCATGTTCATGAACTGGAGCTCGTCGAGGTCGT
CGCGGATCAGGTAGCCGTTGCCCTCTCTCACGCGGCTATTCTTGAAGAATCCATGCGGGC
CCGCGACCTACTCATGGAGCAAAACGTTGCCCTAGATTTAGCTCGGCGAGATGCTGAAAC
GGCAATACGTGCTCGCAATGACTTCTTAGCTGTGATGAATCATGAGATGCGAACCCCGAT
GAACGCGATAATAGCCCTCTCCTCCTTGCTACTAGAAACTGAGCTTACCCCTGAGCAGCG
CCTAATGGTGGAAACAGTGTTGAAAAGCAGCAACCTTTTAGCGACGCTCATCAACGACGT
CTTGGATCTTTCTAAACTCGAGGATGGGAGTTTCGAACTGGATATTAGTGCATTCAATCT
TCATGCTGTTTTCAAAGAGGTGATGAGTTTCGTCAAGCCGATTGCTGCCATAAAAAAACT
TTCCGTGTCGGCTATGTTATCCCCTGATTTGCCCCTATCTGCCATCGGTGATGAGAAGCG
ACTCATGCAAACTGTTCTTAATGTCTGCGGCAATGCCGTTAAGTTCACCAAGGAGGGGCA
CATCTCGCTCTTAGCGTCGGTTGTGAAGTCTGATGCCCTAAGAGAGTTCAGAAGCACCGA
TTTCCATCCGGCTGCGACTGATGGTCATTTCTATGTAAAAGTTCAGGTTAAAGATACAGG
GTGTGGCATCAGCCCCCAGGATCTATCCCATGTCTTCACAAAGTTTGCTCACACGCAGAG
CGGCGGGAACCAGGGGTACAATGGCAGCGGCCTCGGGCTCGCCATTTGCAAGAGGTTTGT
GGGCCTGATGGGCGGGCACATATGGCTGGAGAGCGACGGGGCGGGGAAGGGCTGCACGGC
GACGTTCGTGGTGAAGCTGGGGGCGTGCGACGCATACCAGCAGCCGGCGGTCCCTCTGGT
GTGGCCGAGCCACGCCGGGTCCGACCCGTCTGGCCCGGCTCGTAGAGAAGAGAGAGGGCT
GTCTAACCTGAAACCTAGGTACCAGAGGAGTATATGACATGGTAACCGATGATTGATCGT
CTAATTTTGTGTCCGGAAGATACTTCCGGTGCTCGGAGTATGTTTGTTGTACACAAGATG
TAAAGAAGACGACGGTCCTGTAATCGATCTGATGGATGTTGCTGTGCGGTTAATAGGGCA
TGGCAACAGTGGTAGGGTACCCGTTGCAAGGAAATTTGCGATGAACTCGCAACAGTTGTT
GCACCTGACTGATGGTTCTGCTGCAGTGCAGTGCTTGCTTAAATGTTGCAAAGAGTTGGA
ACCCCATTGCAGGCAGCAAAGCACCAGCAACCATTGTAGTACATTCTGCAATATCACGCC
AATTTGTGAATTTCTCGTGCAATTTGGATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16439 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g49500.1	637	protein\|ethylene receptor, putative, expressed
Brachypodium v1_2	Bradi4g00200.1	635
Arabidopsis v10	AT1G66340.1	738	\| Symbols: ETR1, EIN1, ETR, AtETR1 \| Signal transduction histidine kinase, hybrid-type, ethylene sensor \| chr1:24734698-24737366 FORWARD LENGTH=738