barSeed - Barley Seed Development Database

Probe CUST_21999_PI390587928

Source Contig U35_42703

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21999_PI390587928	Hv_44K_v2	AATAATTTTTGAAGTTGATCTGAAGGTCAAGGATGTGAATGGCAGAAAGGTCAATGACGA	586	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79518.2	1116	2e-24	527 - 586	100	60 / 60	minus	ABC07185 ABC38539
MLOC	MLOC_79518.1	1235	2e-24	641 - 700	100	60 / 60	minus	ABC07185 ABC38539
JLOC1	JLOC1_52959.1	1265	8e-25	554 - 613	100	60 / 60	plus
Harvest21	ABC38538	646	3e-25	587 - 646	100	60 / 60	plus
Harvest35	U35_42703	646	3e-25	587 - 646	100	60 / 60	plus

Contig Sequence (646 bp)

>U35_42703 646 Hv_44K_v2
GATCGAATCCTCTTTTCCTTCATATAAAAGAAAAAAAAAAGAAAAAAGGAACCCGATTCA
ATCCTCGGGGAGCCCCAAGCCCTAGCTCGATTCCTCCCTCCATGGCCGCCGGCGGCTGTT
CTTCTTCTTACTCCTCCACGGCGAGAGAGGGGAGGGCGAGCGCGCGGGCTCGGAAGAAGC
AGAAGCAGCAGCAGCATGAAGAGCAGGAGGAGAAGGGGCCGAACCCTCTGAACCCAAGGT
TCAGCGACTACGACCCCAAGGAGGGCGATTACGTCCTCACCCGATTCCAGCACCCCACGC
TCGACCTCGACATGGAGTCACCTGTTGGTGCCATGTACAATACTAATAGGATCTTCCAAG
ATGGGTCCCGGATGTGTAACTCGGTTAATATTGTCTCGGTCAATATTGTTTCCTCTGACT
ATGGATACCCACTCAGTATCTACGGCACCATCATAGCCAGGGACAGTCTGGATCGCCAAC
GCATCTATTTATTTCAGCGCGGCAAGAACGATTGCCAGAACATCACCTCCAAGAATGATC
CGTTGCTTCTCACTGGCCCAAAGAGAGGACTGATGATATTTGATTCAATAATTTTTGAAG
TTGATCTGAAGGTCAAGGATGTGAATGGCAGAAAGGTCAATGACGA

Homology of Contig U35_42703 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g39120.1	345	2e-58
Arabidopsis v10	None