barSeed - Barley Seed Development Database

Probe CUST_21998_PI390587928

Source Contig U35_28410

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21998_PI390587928	Hv_44K_v2	TTTGGTGGATGCGATAGAGTGTGAGAATGGCCTATGTGTTCCTCAAGGTAAGTTCTACCT	550	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13598.3	2693	2e-24	1415 - 1474	100	60 / 60	plus	ABC40789 ABC49979
JLOC1	JLOC1_9218.2	2348	8e-25	989 - 1048	100	60 / 60	plus
JLOC1	JLOC1_9218.1	2241	8e-25	882 - 941	100	60 / 60	plus
Harvest21	ABC27258	630	3e-25	551 - 610	100	60 / 60	plus
Harvest35	U35_28410	630	3e-25	551 - 610	100	60 / 60	plus

Contig Sequence (630 bp)

>U35_28410 630 Hv_44K_v2
GGGACAAAAAAAGGATTGCCTTTCTAAATAACCAGATTTACAAGGATGATATAACTTGTC
TGACAACGCTGAGGCTTATGAGGGCTTCTTTCTTCGGGTTGTGCCAAGTTTTGAGGGAAC
GCTCTTTGCTCCGTGATACTGTTCATATATGTGTTGAGGAGCAAGTCGCCATGTTCTTGA
TCACAGTAGGACACAACCTTCGGAATAGGGTTGTAGCTGCTATTTTTAATAGGTCAGGTG
AACCGGTTAGTCGCTATTTTGGACTAGTCCTCCATGCTATAGTTCAGCTAAGGGATGAGT
TTATCAGGCCACCATCATTGGAGACCCCAACCAGAATTGCTGGTGACCCAAGATGGGACC
CATACTTCAAGGATTGTATTGGAGCCATTGATGCTACACAGATACAGGCTTCTTCTTGTA
AGAACGTGGAGACTGCCTTCCGTGCTAAGAAGTCATTTGCAAGCCAAAGTGTGATGGCAG
CAATTGATTTTGACCTTCGTTTCACACATGTGCTGGCTCGTTGGGAGGGATCTGCGCATG
ATGATGATGTTTTGGTGGATGCGATAGAGTGTGAGAATGGCCTATGTGTTCCTCAAGGTA
AGTTCTACCTAGTGGATGCCGGATATGGAG

Homology of Contig U35_28410 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g32890.1	262	4e-100	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi3g06253.1	624	6e-91
Arabidopsis v10	None