- Probe CUST_21996_PI390587928
- Source Contig U35_42704
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_21996_PI390587928 | Hv_44K_v2 | CCTTGTTGAACATGCTATATCCAAATTAAGATGTGTGTGCTCTGTATATACTATCGTACT | 66 | GeneList: purple MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.276 | 0.423 | 0.884 | 2.036 | 1.255 | 1.696 |
Raw | 51.796 | 131.438 | 236.567 | 850.526 | 181.288 | 273.447 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_79518.1 | 1235 | 2e-24 | 95 - 154 | 100 | 60 / 60 | minus | ABC07185 ABC38539 |
JLOC1 | JLOC1_52959.1 | 1265 | 8e-25 | 1100 - 1159 | 100 | 60 / 60 | plus | |
Harvest21 | ABC38539 | 576 | 3e-25 | 67 - 126 | 100 | 60 / 60 | minus | ABC38539 |
Harvest35 | U35_42704 | 576 | 3e-25 | 67 - 126 | 100 | 60 / 60 | minus |
Contig Sequence (576 bp)
>U35_42704 576 Hv_44K_v2 TTTTTTTTTTTTTTTTTGATAACAAAAGGTGATAATTAAGCTTCAACAAAAAGTGTAGAC ATATTTAGTACGATAGTATATACAGAGCACACACATCTTAATTTGGATATAGCATGTTCA ACAAGGAAGATAGGGAATCAGCGATGCACAATGGACCAAGTGACCTTCACGAGCATCTTA TAGTCCCCGCAAGTGATTCTCTCTTCATCATAGCTGCCGCGCTTTGGAGTAAACTCGACA GTGCGAACAACGCCTGTAGCAAGGCAAACAGTCAACAGGAGCGTCTCATCAACCGAGACA CTGACTACGCGGCGCGCTGTTTGCAGGATCCCACCCTCACCAGCTGTTAGCATCCCAGCA AGTTTGCTATCATGCAGCATAATGTCACATGGAAAGCTGCTAGTGCGAACGACGATTTTC CCATGGAAATTAACAGGTCCCGCCTCAAGGATCCTCATCTCAACGGTGCCCTCCACCGCC TTCCTTACAAACGTGTAGTTTAAATCCAATGTGCTGTGCATGCTGACAAGCTTTTTGGTT TGAACAATGTATTTCGGTGGAAATGAGAGTCTGAAG
Homology of Contig U35_42704 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | Bradi2g39120.1 | 345 | 3e-65 | |
Arabidopsis v10 | None |