barSeed - Barley Seed Development Database

Probe CUST_21987_PI390587928

Source Contig U35_599

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21987_PI390587928	Hv_44K_v2	TAAAATTACTTCCCGTGAGTTTATCAAACCCTGCCCTACAAGTGGGGTTAGTTTAAAAAA	1798	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18031.2	3084	9e-22	2899 - 2953	100	55 / 55	plus	ABC02631 ABC48478
MLOC	MLOC_18031.1	1949	9e-22	1856 - 1910	100	55 / 55	plus	ABC02631 ABC48478
JLOC1	JLOC1_12462.1	2116	5e-22	1868 - 1922	100	55 / 55	plus
Harvest21	ABC48478	472	3e-25	12 - 71	100	60 / 60	minus	ABC48478
Harvest35	U35_599	1869	3e-25	1799 - 1858	100	60 / 60	plus

Contig Sequence (1869 bp)

>U35_599 1869 Hv_44K_v2
TGGTACCGGTCCGGTCTTCCTCGAGCACTGTTGGCCTGCACAACACCAGCTAGCCAACAG
AGCCAAACTTTACTCGCCGGCAGTGGTAGGCAGCACATCGATCGAGAAGATCCCACGAAT
TAACACCTCGCGCGCCATGTCGTTCCTCCCGATCCCACTGCCAATCGTTGGAGACATAGC
CAGCAGGCTGCATGGCCAAGAGAAACCCCGTGGCGACGACACGACGCCGCCGGCGCCGGC
GCGCGTCCTCGGAACCGTGGCCAGCAGGTGGCGCGAGCTCCACGGCGAGAACTCGTGGGA
TGGGCTCCTGGACCCTCTGGACCCGCACCTCCGCTCCAGCATCATCTCCTACGGCGAGAT
GGTGCAGGCCGCCTACGACGGGTTCAACACCGAGAGGCGCTCCCCGCACTGCGGCGCGTG
CTTCTACGCCTACGAGGACCTGCTCGCCGGCGTCGGGGTGCCCCACCACGGCAACAACTA
CCAGGTCACCAAGTTCATCTACGCCACCTCGTCGCTGCCGCTCCCCAGCTCGTTCCTGCT
GCTGCCGCTGCCGTCGCTGCCGGACGTCTGGAGCCGGGAGTCCAACTGGATGGGGTACGT
GGCCGTGGCCACGGACGAGGGCGCCGCCAAGCTCGGGAGGCGCGACATCGTCGTGGCGTG
GCGCGGCACCGTCCAGAACATGGAGTGGGTCAACGACCTCGACTTCGTTCCCGTGCCCGC
CGCGCCCGTGCTGGGCTCCGCGGCCAGCCAGAACCGCCTCGCCGTCGTGCACCATGGGTT
CCTCTCCATGTACACGTCAAGCAACAAGAGCTCCGAGTTCACCAAGACCAGCGCCAGAGA
TCAGGTCGTCAAGGAGGTGAAGAGGCTGGTGGAGCTGTACAAGGACGAGGAGGTCAGCAT
CACCGTGTGCGGCCACAGCCTCGGCGCGTCGATCGCCACCCTGAACGCCGTTGACATGGT
GTCTAGCGGCATCAACAAGCCCGAAGGCGCCACCAAATCCTTCCCCGTGACAGCCATCGT
GTTCGCGAGCCCCCACGTCGGGTGCCGCTTCTTCAGGTCGGCGTTCCACTCGTTTCCAGA
CCTCAAGGCGCTGCATGTGCAGAACGTTGGCGACGTCGTGCCCCTGTACCCACCTCTGGG
GTACGTGGACGTGGCCGTGCAGCTGACCATAACGACAATCCGGTCGCCGTACCTGCGTGT
GCCGGCCACGGTGGGGACGCTCCACAACCTCGAGTGCTACCTGCACGGGGTGGCCGGGGA
GCAGGGCAGTGCCGGAGGGTTCAAGCTCGAGGTGGACCGTGACATAGCGCTGGTGAACAA
GGGTGCCGATGCGCTCGCGGACGAGCACCCGGTGCCGGCGAGCTGGTGGGTGCCGAAGCA
CAAGTTCATGGTCAAGGGGGGAGATGGGCGATGGACGCTCCAGGACTTCAAGCACATCTA
AGTTAAGTTACTCGCATCGGCCATTCACTAGGAGGAGAGTGGGCGTTGATGTGATTCACG
GCGCTGTGCTCGTTGCCAAGACCGAGGTTCTAAATAACGGCTTACGGTTTGTCGACCGTT
CCTAGTATATTTCCCATTTTATGCAAAATAAGTGAATGTTTCCAACAATATACACTATGC
ATGAGCGACACATGAATATGATGGAAACACTTCTCCTCGACAAAAAAAAAAAAAAAAATC
ATGCATAATTTGTGGACCATATCCTTTGTATGTTTGATTTGAGAGATGAAGGTGTTTTCA
TTTTTTTGCTTGAAAAAAAAAAAAAAAAAAAACTTCGGCTCATCCATTGTGCACATTTTA
AAATTACTTCCCGTGAGTTTATCAAACCCTGCCCTACAAGTGGGGTTAGTTTAAAAAAAA
AAAAAAAAA

Homology of Contig U35_599 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49840.1	408	0.0	protein\|phospholipase, putative, expressed
Brachypodium v1_2	Bradi3g36540.1	439	0.0
Arabidopsis v10	AT4G18550.1	419	9e-125	alpha/beta-Hydrolases superfamily protein \| chr4:10225006-10226862 REVERSE LENGTH=419