barSeed - Barley Seed Development Database

Probe CUST_21983_PI390587928

Source Contig U35_28416

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21983_PI390587928	Hv_44K_v2	AAATGCAGTTACATCCGTGAGAAAACTGAGGACATTGCTGTTAATTGGGCAATATGACTG	615	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252612.1	3259	2e-24	1994 - 2053	100	60 / 60	plus	None
MLOC	MLOC_62466.1	1831	2e-24	1745 - 1804	100	60 / 60	minus	None
MLOC	MLOC_62466.2	1699	2e-24	1613 - 1672	100	60 / 60	minus	None
JLOC1	JLOC1_40877.1	3903	8e-25	2221 - 2280	100	60 / 60	plus
Harvest21	ABC27271	675	3e-25	616 - 675	100	60 / 60	plus
Harvest35	U35_28416	675	3e-25	616 - 675	100	60 / 60	plus

Contig Sequence (675 bp)

>U35_28416 675 Hv_44K_v2
GTAGGGGCATGGAAATCTAACAAACATTGGATGGAAAATAGCAAGCAAGCTAAAAGGCAA
CCCATTAGCAGCAGTAACTGCAGGGGAACTGTTGAGAGTTGATCTTACTGTTGGTCATTG
GAATAAAATTCTGAAGGACGAAGATGGGAAGTTGCTGGGACGTAGTGGACGCATCATGTC
TTCTTTGAAGCTTAGCTATGATCAGTTGCCGTACCATCTACACTAATGCTTCTCGTATTG
TTCTATATTCTCCGACTATGATGAGTTTCTTGCTGAAGAGTTGGTCCACATATGGATTTC
ACAAGGATTTGTCACACGTACTCATTCAAGTAAGAGGTTAGAGGATATAGGAATGGACTA
TCTGGCTGATTTGGTGAACCTGGGATACTTCCAGCAAGTTGAAAGCAAAGACTCCCCTTT
AGGCAGTCAAAATTCATATGTTGTGTCTGGTCTAATGCATGATTTTGCAAGGATGGTTTC
TAGAGCCGAGTGTGGAATTGTTGATGGTCTGCAATGTAATGACATGTTGCCCACTGTACA
ACATTTGGCGGTTGTATACAGGAAAGATCAGCATAGGAACATGTCTTGTACCAGCAAGTT
TGAAGATGATTTGAGAAATGCAGTTACATCCGTGAGAAAACTGAGGACATTGCTGTTAAT
TGGGCAATATGACTG

Homology of Contig U35_28416 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g53160.1	1822	1e-63	protein\|NBS-LRR disease resistance protein, putative, expressed
Brachypodium v1_2	Bradi5g22187.1	1751	1e-78
Arabidopsis v10	None