barSeed - Barley Seed Development Database

Probe CUST_21978_PI390587928

Source Contig U35_16440

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21978_PI390587928	Hv_44K_v2	GGTTTCAACGGGTTCTGAAAAATAGTATGCATAAAGTGGAAGTGATAGTTTGTAGATCAA	2396	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2842.1	2526	2e-23	28 - 85	100	58 / 58	minus	ABC07187
MLOC	MLOC_2842.2	2661	2e-23	3 - 60	100	58 / 58	minus	ABC07187
JLOC1	JLOC1_1698.2	2418	1e-23	2337 - 2394	100	58 / 58	plus
JLOC1	JLOC1_1698.1	2488	1e-23	2407 - 2464	100	58 / 58	plus
Harvest21	ABC07187	2407	3e-25	2336 - 2395	100	60 / 60	plus	ABC07187
Harvest35	U35_16440	2472	3e-25	2397 - 2456	100	60 / 60	plus

Contig Sequence (2472 bp)

>U35_16440 2472 Hv_44K_v2
GTGCCGTCCGTGGTAGACTTCACTGCCGTCCGTCTGTCCGCGCATCTGGCTCCCTCCCTT
CCTTCCTTCCTTCCCCTTTCAGCGCCGCTTCCTCCTCGCCCTGCCCGCCTCCCCCGCCGT
CCAACCTTCCGGCAGCTCCGGGCGTCGAGCCGCCGGCCGAGGGAATGTTGTGACAACTGA
TGTGGTGCTGAAGCATCAGGGATGGAACGATGCGACTGCATCGAGCCGCTGTGGCCGACT
GACGAGCTCCTCATCAAGTACCAGTACATCTCCGACTTCTTCATAGCCCTCGCATACTTC
TCCATCCCGTTGGAGCTCATCTACTTCGTGAAGAAGTCGTCCTTCTTCCCGTACAGATGG
GTTCTCATCCAGTTTGGTGCCTTTATAGTCCTTTGTGGAGCGACCCATCTCATCAACCTG
TGGACTTTCACCACGCACACGAAGACCGTCGCTATGGTCATGACGGTTGCCAAGGTTTCG
ACGGCCGTCGTTTCCTGCGCGACGGCTTTGATGCTTGTTCACATCATCCCTGACCTGCTT
AGTGTCAAAACGAGGGAGCTGTTTCTGAAGAATAAAGCTGAAGAGCTTGATTGGGAGATG
GGCTTGATAAGGACGCAGGAAGAGACCGGGAGACATGTTAGGATGCTAACTCATGAAATC
AGAAGCACACTCGATAGACATACGATTTTGAAGACTACCATTGTTGAGCTAGGAAGGACC
TTGGGTCTCGAAGAGTGTGCCCTGTGGATGCCATCAAGAAGCGGTTCAAATCTTCAGCTT
TCACATACTCTGCGCCACCAAATTACTGTTGGGTCATCTATATCAATTAATCTTCCTGTT
ATCAACCAAGTTTTCAGTAGCAATCGAGCAATCATAATACCGCACACATCCCCTTTGGCA
CGGATCCGGCCTCTTGCAGGACGATATGTTCCACCAGAAGTGGCTGCAGTGCGAGTACCT
CTTCTAAATCTTTCAAACTTCCAAATAAATGACTGGCCAGAGCTTTCAGCAAAAAGCTAT
GCTATTATGGTTCTGATGCTTCCATCTGATAGTGCAAGGAACTGGCATGTGCATGAGTTG
GAGCTTGTTGAGGTCGTCGCCGATCAGGTAGCAGTTGCACTCTCTCATGCAGCTATCCTT
GAAGAGTCCATGCGTGCGCGTGATTTGCTAATGGAGCAAAATGTTGCCCTGGATTTAGCT
CGACGAGATGCTGAAACGGCCATCCGTGCTCGGAATGATTTCCTAGCTGTTATGAATCAT
GAAATGAGAACACCAATGAATGCAATCATAGCTCTTTCGTCCTTACTCTTGGAAACTGAA
CTAACTCCTGAGCAGCGTTTAATGGTGGAAACAGTATTAAAGAGCAGCAATCTTCTAGCA
ACACTTATCAATGATGTGTTGGATCTTTCCAAACTTGAGGATCGCAGCCTTGAATTGGAG
ATCAGAGCATTCAATCTTCATGCTGTCTTCAAAGAGGTGATGGGTTTCATCAGACCAATT
GCAGCTATCAAGAGGCTGTCTATGTCGGTTATGTTAGCACCAGATTTACCATTATGTGCT
ATTGGCGATGAAAAGAGGCTAATGCAAACTATCCTAAATATCTCCGGTAATGCTGTTAAG
TTCACCAAGGAGGGCCACATTACACTTCTAGCTTCCATTCTAAAGCCTGATTCCTTAAGA
GAGTTCAGAACCCCAGATTTCCATCCAGCTGCAAGTGATGACCATTTCTACTTGAAAGTT
CAGCTGAAGGATACAGGCTGTGGCATTAGTCCTCAGGATCTACCCCATGTGTTCACAAAA
TTCACCCAAACTCAGCCTGGAGGCAACCAAGGATACAGCGGAAGTGGCCTTGGCCTTGCC
ATCTGCAGGAGGTTTGTGACTCTGATGGGAGGCCACATCTGGCTGGACAGTGAAGGGGCA
GGAAGAGGCTGCACGGCCACATTCATCGTCAGGCTCGGCGTGTCCGACAACACAGACGCA
TACCGGCAGCAGCTGACCCCTCTCGCCTGGCCAGGCAGTGCAAATGCCGAATCATCCGGT
CCAAAGGCGCTTCACGAGGAGAGGTGGCCGCCGTCTTCCCTGAAGCCTCGTTACCAGAGA
AGCGTATGAGGTATAGTGTAAACGGTCGACGGTGCTGGTGTCGAGTAGGGAGTCAGTAGC
TAGTTTTGTGAGTCCCCCCTCTAATTTTGTGCCTAGTCTTGCTGTAGCTGGCATATATTG
TACAAATAATGTGTATAGCAAATGGGACTTCAGATTGCAGTTATGTTCCTGGGCGCAGCA
TCAACTCGCTGCGTTCAGTAGCATATGCTGTCCAGCGAATTTGCATATTCCGTGTGCGCG
TGACCCCGGTTATATCAGATCGAAACTACTCTCCGTGGGAAGGAACCATGTGTAAAGGTT
TCAACGGGTTCTGAAAAATAGTATGCATAAAGTGGAAGTGATAGTTTGTAGATCAAAAAA
AAAAAAAAAAAA

Homology of Contig U35_16440 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g49500.1	637	protein\|ethylene receptor, putative, expressed
Brachypodium v1_2	Bradi1g11540.1	635
Arabidopsis v10	AT1G66340.1	738	\| Symbols: ETR1, EIN1, ETR, AtETR1 \| Signal transduction histidine kinase, hybrid-type, ethylene sensor \| chr1:24734698-24737366 FORWARD LENGTH=738