barSeed - Barley Seed Development Database

Probe CUST_21964_PI390587928

Source Contig U35_16447

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21964_PI390587928	Hv_44K_v2	ACACGTCATATCATTGGCTGTGTATACGAGAATACGATGATGCATGTGTTCAATAAAAAA	2320	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74748.1	3932	3e-21	3828 - 3881	100	54 / 54	plus	ABC07846 ABC19048
JLOC1	JLOC1_49835.1	3892	2e-21	3781 - 3834	100	54 / 54	plus
Harvest21	ABC07846	2409	6e-22	2321 - 2374	100	54 / 54	plus	ABC07846
Harvest35	U35_16447	2391	3e-25	2321 - 2380	100	60 / 60	plus

Contig Sequence (2391 bp)

>U35_16447 2391 Hv_44K_v2
GCTCTCGTGATGCCATTCGTTGAGGAGAACATAACAAAACCTGAATGGAGACACAGAGAA
GCTGCAACATATGCTTTTGGTTCCATTTTGGAGGGTCCATCAGCTGATAAACTGACTCCT
CTAGTTAATGTCGCCTTGAATTTTATGCTGTCTGCGTTAGTAAAGGACCCAAATAACCAT
GTGAAGGACACAACTGCTTGGACCCTCGGAAGAATATTCGAGTTTCTTCATGGTTCTGCA
CTTGAAACTGCTCCCGTCATTACAGCTGAGAACTGCCAGCAAATTCTTACCGTGCTGCTT
CAAAGCATGAAGGATGTCCCAAATGTGGCGGAAAAGGCATGCGGGGCACTCTATTTCCTT
GCTCAAGGCTATGTGGATGCTGGATCCGCGTCACCATTATCCCCTTTCTTTCAAGATATT
GTTCAGAGCCTTCTTGTGACCAGTCATAGAGAGGATGCTGGTGAATCCAGGCTGCGTACT
GCAGCTTATGAGACTCTAAATGAAGTCGTCAGGTGCTCCACTGAGGAGACAGCTCCTATT
GTTATGCAGCTAGTACCTGTTATTATGATGGAACTCCATCAGACACTTGAAGCGGGGAAG
TTATCAACTGATGAGAGGGAGAAGCGGAGCGATCTGCAGGGCCTTCTTTGTGGTTGCCTA
CAGGTTATTATCCAGAAGTTGGGAGGGATGGAGTCAACAAAGTTTGCCTTCTTACAGTAT
TCAGATCAGATGATGGATCTGTTTTTGAGAGTTTTTGCTTGCCGAAATGCCACGGTGCAT
GAGGAGGCTATGCTTGCTATCGGTGCACTGGCATATGCAGCCGGTTCGAACTTTGCGAAG
TACATGGCACAATTCTATCAGTATTTGGAAATGGGACTTCAGAACTTTGAAGAGTATCAG
GTATGTGCCATTACGGTGGGTGTTGTGGGCGACTTGTGCAGGGCACTGGAGGACAAAATT
TTGCCCTACTGTGATGGCATCATGACCCAGCTCCTGAAGGATCTATCCAGCAATCAGTTG
CACAGATCTGTAAAACCACCTATATTCTCATGCTTCGGTGATATTGCACTGGCAATTGGA
GAGAACTTCGAGAAGTATTTGATCTATGCCATGCCCATGCTACAAAGTGCAGCAGATTTG
TCGGCGCACACAACTGCAACTGATGATGAAATGCTTGACTACACCAATCAATTAAGAAAT
GGCATCTTGGAGGCCTACTCTGGTATTCTTCAAGGATTCAAGAGTTCCCCTAAGACACAG
TTACTCATGCCGTATGCTCCACATATTCTTCAGTTCCTTGATGCCCTTCATAATGGAAAG
GATATGGATGATTCTGTGATGAAGACTGCAATAGGTGTCTTAGGAGATCTTGCAGACACA
TTGGGCGTCAATGCTGGTCCTTTGATCAATCAATCCACATCAAGCAAGCAATTTTTGGAT
GAGTGCTTATCATCTGATGATCCTTTGGTCAAAGAATCAGCTGACTGGGCAAGGATTGCA
ATCAGCCGTGCGGTTTCGGGTTGACGTGACATTTGTCTTGAGTCTGCATATGCATCCATC
CACGAGTCGAGTCCAGGTCTTCGGTTGCATCATGTCTAGACCTGCTCTTTGGAGAAGTCG
AACATCCTCAAAGCAGAGTCGGAGGGTCCTCACTAACTCATGCATCAGTACATGTGTCAA
CCCAGCCTTTTTCACTTCTGCGGAAAAGAGGGTTAAGTTGGCCACCTGCTAACTTCTCTA
AAAAGGGAATCCAGGAGCTTCCATTGTTGCCTGCGTTACCAATGGTCCGTCGGCGTGGCA
TCCATGCTTATGGTCTGGGTGCTCTCGCTTTACCTTGCATCCATTGCATGCATCGAACTT
TGGTCATATGGTCACTCATTAAAAGGCCCGATTGCTTATTCATCCATTATGCATAAGGGG
CTCGCGGGCATTGTCACAGGATTATTTTTGTACTACTCAGGGTGTCCAACTTCACCATGT
GGGACATGTTCCTCCTGAGCCGGTAGTTTTTTTTTCCTTTCGCATTTGCATTGTTTTGCA
TTCATCCCAGACTGTTTTGTAAGGGTTCTTTTGGTTAAAAACTGAGACGGCATGCGGTTG
TGTCTGTTTATTTCAAGGTGTTGTCGGAGCAGTGCGTGATTGCGCTCTTTTTTTTGGTCA
TCTATGCTGCTGTTCCATTTCAGCTTCTTTGAAGCTTGTGCTGGCGGGTGGAAAAGAACA
ATTGTAGCTCTTGGAGTGGTTTTGTTCGGGGGGCAGCTGTCGAGTTGTATTTGTTTATTA
CAGGAACTGTATTATTTTGTGGAACTCTGCCTCCTACCAGACACGTCATATCATTGGCTG
TGTATACGAGAATACGATGATGCATGTGTTCAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_16447 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g38110.1	873	protein\|importin subunit beta, putative, expressed
Brachypodium v1_2	Bradi1g35630.1	873
Arabidopsis v10	AT5G53480.1	870	ARM repeat superfamily protein \| chr5:21714016-21716709 FORWARD LENGTH=870