- Probe CUST_21955_PI390587928
- Source Contig U35_28423
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21955_PI390587928 | Hv_44K_v2 | ATACCTTGAGAAGTATGCTAAACCAAATTCTGGAATTGGGTTCCCTGGGGCTCTGGAACT | 41 | GeneList: white MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.976 | 1.219 | 1.385 | 1.280 | 0.639 | 0.659 |
| Raw | 62.713 | 112.974 | 122.871 | 182.562 | 30.830 | 36.096 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_52140.4 | 2328 | 2e-24 | 1639 - 1698 | 100 | 60 / 60 | minus | ABC17764 |
| MLOC | MLOC_52140.5 | 2309 | 2e-24 | 1627 - 1686 | 100 | 60 / 60 | minus | ABC17764 |
| MLOC | MLOC_52140.7 | 1238 | 2e-24 | 552 - 611 | 100 | 60 / 60 | minus | ABC17764 |
| MLOC | MLOC_52140.6 | 2180 | 2e-24 | 1518 - 1577 | 100 | 60 / 60 | minus | ABC17764 |
| MLOC | MLOC_52140.1 | 2338 | 2e-24 | 1635 - 1694 | 100 | 60 / 60 | minus | ABC17764 |
| MLOC | MLOC_52140.2 | 2615 | 2e-24 | 1912 - 1971 | 100 | 60 / 60 | minus | ABC17764 |
| MLOC | MLOC_52140.3 | 2312 | 2e-24 | 1609 - 1668 | 100 | 60 / 60 | minus | ABC17764 |
| JLOC1 | JLOC1_33371.7 | 1371 | 8e-25 | 617 - 676 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33371.6 | 2478 | 8e-25 | 625 - 684 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33371.5 | 2498 | 8e-25 | 624 - 683 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33371.4 | 2481 | 8e-25 | 617 - 676 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33371.3 | 2475 | 8e-25 | 617 - 676 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33371.2 | 2502 | 8e-25 | 617 - 676 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33371.1 | 2496 | 8e-25 | 617 - 676 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17764 | 657 | 3e-25 | 42 - 101 | 100 | 60 / 60 | plus | ABC17764 |
| Harvest35 | U35_28423 | 630 | 3e-25 | 42 - 101 | 100 | 60 / 60 | plus |
Contig Sequence (630 bp)
>U35_28423 630 Hv_44K_v2 GGATTTAGTACTGAAAGCGCCAAGAAGCGCTTTTTTGAGATATACCTTGAGAAGTATGCT AAACCAAATTCTGGAATTGGGTTCCCTGGGGCTCTGGAACTCATCATGGAGTGCAAAAAC GCAGGTCTGAAGGTCGCTGTTGCATCTAGCGCTGATAGGGTTAAGGTTGACGCGAATCTG GCAGCTGCTGGTTTGCCTGTATCGCTATTTGATGCTATTGTTTCCGCTGATGCTTTTGAA AATTTAAAGCCGGCTCCAGACATTTTCCTTGCAGCATCTAAGAACTTAGGTGTTGACACG GATGAGTGCATCGTGATAGAAGATGCGCTTGCTGGAGTTCAAGCTGCGGAAGCTGCAGAA ATACGATGTATTGCTGTGACGACTTCTCTAGATGAAGATGCATTACGACAAGCCAGTCCT GTGTTCATCAGAAAAGACATTGGAGATATTTCAATTAATGACATCCTGTGTGGTGGTTCT AATGCTTACCACAGTATGTAGTTCAAGCATAATCGATTTACTTTAATAATACATCTCTTG TAGGAGAAACCGGAAAGAAAAACCTGTGTATCTTGTGTGCAAAATTCACTTCTTTTGTTC TATGAACTTCAATGAATAATGCCCTGTGTG
Homology of Contig U35_28423 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g19760.2 | 773 | 2e-78 | protein|HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed |
| Brachypodium v1_2 | Bradi1g64267.1 | 899 | 4e-82 | |
| Arabidopsis v10 | AT1G56500.1 | 1055 | 1e-64 | haloacid dehalogenase-like hydrolase family protein | chr1:21159775-21167092 FORWARD LENGTH=1055 |