barSeed - Barley Seed Development Database

Probe CUST_21945_PI390587928

Source Contig U35_30742

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21945_PI390587928	Hv_44K_v2	CTTATCGTTATAATTCAAGCTGTACCGTTAGAGGCTTTGGCTGTACCGTTAGAGGCTGCT	526	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_27342.1	891	2e-24	637 - 696	100	60 / 60	minus	ABC43121
MLOC	MLOC_27342.2	911	2e-24	657 - 716	100	60 / 60	minus	ABC10309
JLOC1	JLOC1_18476.1	1017	8e-25	806 - 865	100	60 / 60	minus
JLOC1	JLOC1_18475.2	872	8e-25	180 - 239	100	60 / 60	plus
JLOC1	JLOC1_18475.1	877	8e-25	165 - 224	100	60 / 60	plus
Harvest21	ABC30781	644	3e-25	527 - 586	100	60 / 60	plus
Harvest35	U35_30742	644	3e-25	527 - 586	100	60 / 60	plus

Contig Sequence (644 bp)

>U35_30742 644 Hv_44K_v2
GTTGAACTTCTTCAAGCGTTTCCTCGGGAGAGGCTTCCTGAAGCATGTGCAGGACAATGG
ACTTCTTCAAGATATCTTCAACATCAAGGCTGACAAGGCTGAAACGCTGTCATCGAATGA
CAAGGTAAAACTGAGACATACAAGGCCTTAATTTGCAATGATGGTTGCTGTGGAGAGCTT
TAATAAAGATGATTGATTTGGTCTATGGAGTTAATTTACAAAATGTGAATGAATTATGCC
TACCCCAGCAGTCTTGGACTTCTGACCTGTTATATGATTGATTCCATAAAATACCAACAG
CAAAGACACAAAACACTCTTAGCAAGGGATTAGGCTAGATTAGAAATAATTAAGGCAAGG
TTGATGGTCGATGTGTCTTGGGGCATATATAATTATATATGCTCGTGGATTAGTATGAGA
CAGGAACTATTATCCTTGAAAATCTGGCTTAGTATGAGACAGGGGAACTATTGTCCTTGA
AAATCTTGTGTCAACCTTCCTCTGCTGTGTACAAGAAAAGAGATTGCTTATCGTTATAAT
TCAAGCTGTACCGTTAGAGGCTTTGGCTGTACCGTTAGAGGCTGCTTAGCGCATCTNGCA
TCCATGTGGTTGCTGATACTAAGAGTACGAGAAATTACCTAGCA

Homology of Contig U35_30742 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None