barSeed - Barley Seed Development Database

Probe CUST_21944_PI390587928

Source Contig U35_16450

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21944_PI390587928	Hv_44K_v2	ATATTGGAGTTATCCTTCCAAGGGCAACATGTGATTTCACAGTTACCATGCAAGCACAGC	423	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.005	0.975	1.460	1.354	0.849	0.481
Raw	84.924	117.928	170.187	238.550	53.000	33.397

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63303.1	1582	2e-24	1057 - 1116	100	60 / 60	minus	ABC05361 ABC39478 ABC48336
MLOC	MLOC_63303.2	1641	2e-24	1074 - 1133	100	60 / 60	minus	ABC05361 ABC39478 ABC48336
JLOC1	JLOC1_41452.2	2368	8e-25	465 - 524	100	60 / 60	plus
JLOC1	JLOC1_41452.1	2559	8e-25	481 - 540	100	60 / 60	plus
Harvest21	ABC05360	834	3e-25	420 - 479	100	60 / 60	plus
Harvest35	U35_16450	838	3e-25	424 - 483	100	60 / 60	plus

Contig Sequence (838 bp)

>U35_16450 838 Hv_44K_v2
GAGAGAGAGCCGCACCGCAACCGTCCCCCTCGTCAAACCCGCCGACGAAGGGGGAGGACG
GCGATGAAGTGCCCGTCGCCCTCAAATCCCCCCTCGCCTTCTCCCCTCTCCACTCCAACT
CCTCCCTCCCTCCCTCCCCACCCCCGTCCAAACCCCTCCTGCCGTCCCAGTCGAAGCCGC
GGACTCGGGGGGAGGGATTAATCGGAGGCCTCCGCAGCGCGGCTTACTGATTCGCCTGCC
GTCCGACCCTCTTCGCGGCAGCGATGGGCCAGGGCGTCGTCGAGATCCAGCCCCGCGAGC
TCCAGTTCACCTTTGAGCTGAAGAAGCAGAGTTCATGTTCTGTCCATCTTGTCAACAAAT
CCGATGAATATGTCGCTTTCAAGGTTAAGACAACTTCCCCTAAAAGATATTGCGTCCGAC
CAAATATTGGAGTTATCCTTCCAAGGGCAACATGTGATTTCACAGTTACCATGCAAGCAC
AGCGTACTGCGCCACCAGACATGCAATTAAAAGACAAATTTTTGGTGCAGACCACAGTTG
TGCCTCCTGGTACATCAGATGAGGACCTCATTCCTGCTTTTTTCTCCAAAGAAACCAATG
CATATATTGAGGAAAGTAAATTGAGAGTTGTCCTTGTTGATGCATCTCGTCCTCCTGTGG
AGCAACTGATAAATAATGTCCCTAGCACAACTGTGGCAGTTGAGGTTCCCGTGTTAAAAG
ATACACTGAATGTTCAGAATGAAGTGCCAGCTATGGAGAAAAAGGTTCCTGTTCAGAATG
AAGTGCCAGCTATGGAGAAAAAGGTTCCTGCCTCCCAGGAGAAAATTTCAGCTGTTCC

Homology of Contig U35_16450 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g71050.1	381	3e-89	protein\|MSP domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g60150.2	364	3e-101
Arabidopsis v10	None