barSeed - Barley Seed Development Database

Probe CUST_21941_PI390587928

Source Contig U35_16451

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21941_PI390587928	Hv_44K_v2	CTTTTACGTGTACATCGATCGATTTTATTACGTTCCATGATGGATTCACGACATCAAAAA	1801	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.225	2.409	1.929	0.951	0.374	0.317
Raw	24.360	79.135	51.225	42.425	4.402	3.537

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21234.3	1026	3e-22	951 - 1006	100	56 / 56	plus	ABC06734 ABC42832 ABC44362
JLOC1	JLOC1_14737.1	1453	1e-22	1361 - 1416	100	56 / 56	plus
Harvest21	ABC06734	1778	3e-25	1707 - 1766	100	60 / 60	plus	ABC06734
Harvest35	U35_16451	1873	3e-25	1802 - 1861	100	60 / 60	plus

Contig Sequence (1873 bp)

>U35_16451 1873 Hv_44K_v2
AACTTGAGAGGCCTGGACTCTGGAGGGAGGGAGAGGATATATGTACTCCATACTGGCACA
TCGCTACGCCATCCGATTGGAGGGCAGCAGCGGGGCAGCAAGCATCCTCTGACCTGCCAA
ACCGCCCCCAGCAGCAGCAGCAGCACCGGCAGCGGAGCCTTGGCCACTTCCTCCCTTCCA
AGCACCGCCAATCTTGTCCGACCTCCGCGTCCACAGGGTGCCAAACCCAAGAAAGACACA
CAACACAACATAGGAGCGGGAAGCTCGGGGAGGAGAGGATTAGACCGACCGGCCGACTGA
CGCGACGACAATGGGGGCTTCCTCTTCTTCTTCTTCTTCCTCGGTGCGGCTGCGGCTGCT
GCTGCCGCTGCTCTGCCTGCTCGGCTTCTGCTTCGCGGGGAGCCACCAGAAGTCGGACTC
GTGCGACGGGGACCTCCCCGTCGCCCGCCTCGTCCCCTTCGACTCCGACGCCTTCCACTG
CATCACCCTCTGGAAGGACGAGGACTTCATCCTCAGGTACAAGAACACGGGGACGAGCCA
ATGGAGCTTCGTGCTGTCGGCGCCGGACAAGAGGTCCTACGTGGCCGTCGGGTTCTCGGG
CAAGGGGGGCATGGTCGGCAGCAGCGCCATGCTCGGCTGGTCGTCGGGCGGCAAGGGCGT
CGCCAAGCAGTACTACCTGCAGGGCAGGAGCCCGGAGGCCGTCACCCCGGACGACGGCCG
CCTCACCCTCGTCAGGAACCGGACCGTCGCCGTCTCCAAGTCCGGCCGGCTCTACCTCGC
CTTCGAGCTCAGCACCGACCGCCCGCAGCCGTACCTGATCTACTCCGTCGGATACGAGGG
CAGCCTCCCTTCCTCCGACGACTCCACGATCCAGATGCACCGCGACATGGGCTCCCGCTC
CTTCAAGTTCGCCTCCGCGTCGCCGTCTAGCGCCGGCGGCGAGTCGGACGACGCGGGGTT
CCCGGCGAAGAGGTGGCACGGGCTGCTGTCCATGATGGGCTGGGGCGTGCTGCTGCCGAT
GGGCATGATGGTGGCGCGCTACTTCCGGCGGCAGGACCCGTACTGGTTCTACGGCCACAT
CGCCGTGCAGGGGCTGGGCTTCCTCATCGGCATCGCGGCGGTCGTCCTCGGCTTCCGGCT
CAACGGGGACGGGCTCAAGAACATCGTGGTGCACAAGGTCATCGGCATCTCCATCCTGTC
CATGGCATGCCTCCAGGTGACGGCGGTGCTGGCGCGGCCGGACAAGACGTCCAAGGTGCG
CCGGTTCTGGAACTGGTACCACCACAACATCGGGCGCGTGGCGATCCTTCTGGCCATGGC
CAACGTCTTCCTCGGCCTCACCATCGCCAAGGAGGTGAGCGCGTACATCGTCTCCTACGG
CGTCTTCGTCGCCGTCTGGATCATGGCCGTCGCCGCCTTCGAGTTCAAGCGCTACTACGA
GGACGACGACGACTGACCCATCCGTCACCCATCATCCTACATTGCGTCGCGTCCGTCCAT
GAAGGGCGGCGATCGCATAGAGAGAATTAATCTGGAGCAGCTATCACCAGACGGGCATTG
CTTGTAGTAGCGGGCTCACCTCGCAGCTTGGGCGGATGGCGAAATTTGAGGATCTCTGTT
AAAAAAATATATTCTTTTGCGGTATAGGATACGGAACAGGAGTGACTGATGTCGCTAAGC
CTAATTAGCTGGACGCTCTGATTCATATTTGTACATTGGTACATGGTGTCATAAAAAAAA
AAAAAAATTGTACCCTCCCTGCCTTTTGGTTGCTTTGGTAGATTGCTCAAGTTTTCTTCC
TCTTTTACGTGTACATCGATCGATTTTATTACGTTCCATGATGGATTCACGACATCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_16451 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g41810.1	382	1e-164	protein\|expressed protein
Brachypodium v1_2	Bradi5g14490.1	376	0.0
Arabidopsis v10	AT3G07570.1	369	5e-88	Cytochrome b561/ferric reductase transmembrane with DOMON related domain \| chr3:2418205-2420206 REVERSE LENGTH=369