barSeed - Barley Seed Development Database

Probe CUST_21939_PI390587928

Source Contig U35_16452

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21939_PI390587928	Hv_44K_v2	TTGTCAACTCTTGTCTACAGTACTATATAAAGGGGCTGACTCCTCAATAAAGCAGAGAAG	1430	GeneList: turquoise MasterList: Lysine_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.338	1.217	1.114	0.917	0.336	0.364
Raw	8403.123	11855.220	9612.287	12487.020	1601.380	1909.277

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78874.1	404	2e-24	162 - 221	100	60 / 60	minus	ABC05343 ABC43268
JLOC1	JLOC1_52561.1	349	8e-25	107 - 166	100	60 / 60	minus
Harvest21	ABC43268	453	3e-25	42 - 101	100	60 / 60	minus	ABC43268
Harvest21	ABC05343	1520	3e-25	1431 - 1490	100	60 / 60	plus	ABC05343
Harvest35	U35_16452	1520	3e-25	1431 - 1490	100	60 / 60	plus

Contig Sequence (1520 bp)

>U35_16452 1520 Hv_44K_v2
GGATGGCGGCGGCAGACCGGACCCCGTTCTATCTCTACAGCAAGCCGCAGGTCGTCCGGA
ACTTCACCGCCTACGACAAGGCGCTCCAGGGGCTCCGCTCAATCGTCGGGTACGCGGTGA
AGGCCAACAACAACCTCAGCGTGCTGCAGCTCCTGCGGGGGCTCGGCTGCGGCGCCGTCC
TCGTCAGCGGCAACGAGCTCCGCCTCGCGCTGCGGGCAGGATTTGACCCCACCAGGTGCA
TATTTAATGGAAATGGAAAGACATTGGAAGATCTTGTTTTAGCTGCAGAGAGTGGAGTAT
TTGTAAATATAGACAGTGAATTTGATTTGGAGAATATTGTCACTGCTGCAAGAGTTGCAG
GAAAGCAAGTGCCTGTTTTGCTCAGAATTAATCCAGATGTGGATCCGCAGGTTCATCCAT
ATGTTGCCACTGGAAACAAAACATCCAAATTTGGGATTCGCAATGAAAAATTGCAATGGT
TCTTAGACTCGATTAAGTCGTACTCAAATGATATCAAACTGGTGGGTGTTCATTGCCATC
TTGGATCTACCATTACAAAGGTCGATATATTTAGAGACGCTGCAAATCTTATGGTGAACT
TTGTTGATGAAATTCGAGCGCAAGGTTTTGAGTTGGAGTACCTGAATATCGGAGGTGGCT
TGGGGATAGACTACCACCACACGGGTGCAGTCTTGCCTACACCTATGGATCTTATCAACA
CTGTCCGGGAATTGGTCCTCTCACGGGATCTTACTCTCATTATCGAACCTGGAAGATCCC
TGATCGCCAATACTTGCTGCTTCGTTAACAAGGTCACCGGTGTAAAATCTAATGGCACAA
AGAATTTCATTGTTGTTGATGGCAGCATGGCGGAGCTCATTAGGCCTAGTCTATATGGAG
CATATCAGCATATAGAACTAGTTTCCCCCTCTCCAGGTGCAGAAGTAGCAACCTTTGACA
TTGTTGGGCCAGTCTGTGAATCTGCAGATTTCCTTGGCAAAGACAGGGAGCTTCCAACGC
CTGACAAGGGAGCTGGTTTGGTTGTCCATGACGCAGGAGCCTACTGCATGAGCATGGCTT
CGACCTACAACCTGAAGATGAGACCAGCCGAGTATTGGGTAGAGGATGATGGGTCCATCG
TTAAGATCAGGCATGGCGAAACATTTGATGACTACATGAAGTTCTTTGATGGTCTCCCTG
CCTAGTCCCTTCATCTTTGATGGTCTCCCTGCCTAGTCCCTTCATCTTTGATGGTCTCCC
TGCCTAGTCCCTTTCATTTGATGAGGGCATCTCGTGGAAGATTATTGTGGGGAAAACTAT
TCGTGTGTATGCTACGTGGGCCATCCCGTCAAACGTGGGGCCTTGTTTGCTAGGATAGGG
TCCACTTGGTTTAGAGATTTTATTAGAGTTTGAATGGACCTACCGGCTTGTTGTCAACTC
TTGTCTACAGTACTATATAAAGGGGCTGACTCCTCAATAAAGCAGAGAAGAATATTATTG
TTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16452 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g24354.1	491	protein\|pyridoxal-dependent decarboxylase protein, putative, expressed
Brachypodium v1_2	Bradi3g11130.1	489
Arabidopsis v10	AT3G14390.1	484	Pyridoxal-dependent decarboxylase family protein \| chr3:4806771-4808954 FORWARD LENGTH=484