barSeed - Barley Seed Development Database

Probe CUST_21938_PI390587928

Source Contig U35_30746

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21938_PI390587928	Hv_44K_v2	TTGTTTTTTGCTGATCGATTTTGCTCTTCTGCTCTTTCTGCTTGGTTTGGGGCGCATGCA	120	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.697	0.798	1.765	1.458	1.045	0.795
Raw	10.292	16.463	34.702	39.698	11.025	9.556

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC30786	458	3e-25	121 - 180	100	60 / 60	plus
Harvest35	U35_30746	458	3e-25	121 - 180	100	60 / 60	plus

Contig Sequence (458 bp)

>U35_30746 458 Hv_44K_v2
CCCCCGTCCCCAGCGAACCTCCCCACCACCATCTCGCGTCGCGGCGTCAGTTCCACTCCT
TCGCCATGGGTAAATCGCTCGTCGATTTCCTGCCGCTTCTTCTCCTGATCTGAACGACGC
TTGTTTTTTGCTGATCGATTTTGCTCTTCTGCTCTTTCTGCTTGGTTTGGGGCGCATGCA
GGCAAGATTAAGATCGGAATCAACGGTTTCGGAAGGATCGGGAGGCTCGTCGCCAGGGTC
GCACTCCAGAGCGACGATGTCGAGCTCGTCGCCGTCAACGACCCCTTCATCACCACCGAG
TACATGACGTACATGTTCAAGTACGACACAGTTCACGGCCATTGGAAGCACAGTGACATC
AAGCTCAAAGACGACAAGACGCTGCTCTTCGGCGAGAAGCCAGTTACTGTCTTTGGCGTC
AAGAACCCTGAGGAGATCCCGTGGGGTGAGGCCCGTGC

Homology of Contig U35_30746 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g03290.4	263	4e-54	protein\|glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g14040.1	338	2e-57
Arabidopsis v10	AT1G13440.1	338	2e-52	\| Symbols: GAPC-2, GAPC2 \| glyceraldehyde-3-phosphate dehydrogenase C2 \| chr1:4608465-4610494 REVERSE LENGTH=338