barSeed - Barley Seed Development Database

Probe CUST_21936_PI390587928

Source Contig U35_16454

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21936_PI390587928	Hv_44K_v2	TAATTTGATGGCGTCGGACTTGGTGAACGCCCATAGGAACTGGGTTTTCGGAAACAATAT	987	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.135	1.667	1.038	0.977	0.547	0.594
Raw	900.633	1099.859	591.551	860.230	174.829	204.699

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16498.2	1147	3e-21	1008 - 1067	97	58 / 60	plus	ABC05397
JLOC1	JLOC1_11360.1	1211	4e-23	1042 - 1101	98	59 / 60	plus
Harvest35	U35_16454	1081	3e-25	988 - 1047	100	60 / 60	plus

Contig Sequence (1081 bp)

>U35_16454 1081 Hv_44K_v2
GTGTCCATCCGCCTCGGAGCGACTAGAGACGCGCACTCATTTCTCAGGACTACACAGATC
GGAGAAACCGAGGCCAGCCGCGCGAGCAACTTCTTCCACTTCGATCGATCCAGAGAGAGA
GAGAGGGGTTCCGATGGGGCTGCAGTGGATGCTCCTGACGTGCGTGGTTGGGGCGGAGGC
GGCGGTGGCCGCGCTGGTCACGCTCCCGGCGCCGCGGGCCGTGCGGGCACAGATCGTCGG
GCTCACCTCGATGCTTCTGCAGCCCCTGGCCGGCGTGCTCCCCTTCGCCGCCTTCCAGCT
ACTCGATATCTACTGGAAGAACGAGCACAGGCTGATTTGCACGGGAGAGATGTGCACCTC
CGAGGAGCGTGTCCGCTTCGAGAAATCCATTTTCAAGTCCCAGAGAAATGTCATCCTTTG
TGTTTCGGTGTTTATCCTTTATTGGTCCATCTATCGTATTTGCAAGTTCAACAAGGACAT
TAAGGCACTGGAGGAGGTTGAGAAGCGCATCAAGGAAGAGTAGATTCATCGTAGTTTGTG
ATGGATTTTGTGGTATTCCCGGCCTTCAGCAGATGTATCCAGACTTTAGGATATCCAATG
TATATTTGGTTCTCCTTTGAGCAAATAGAATGTAACCTGTTTCGACGCTTCGCATCCCCC
TTTTTCAGACCGGCTGTTCTATATGTAACTTGTGGTGGTGGTTACTACGGAGACATCTAA
ACGTTTCCATATTAGTCATCCTTGAAGTTTGAACATCTGCTAGAATGTTGTCTGGACCGA
CCTTTCGGTGGTCTTCCATGTTAAAATAGTCTGGTATTTCTGTAGAATTTCACTCCTTGC
TTGATGTCGAAGTTCCCAGCAGTTGAGATGGAGACTCGGTCATAAATCGAGACGGCTGTT
TTTCAAAGAAAAGAATATCTAGATGGCCGATGGTGTTCTGTACGTTTGTGGTGTTGGAAG
GGCAAACTTACAGAACATGTCCGGCTGTAATTTGATGGCGTCGGACTTGGTGAACGCCCA
TAGGAACTGGGTTTTCGGAAACAATATGAACTGCCTTGGCCAGGCAGCGGCCGCTCGAGC
A

Homology of Contig U35_16454 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g13750.1	130	1e-50	protein\|erwinia induced protein 2, putative, expressed
Brachypodium v1_2	Bradi1g68520.1	130	4e-51
Arabidopsis v10	None