- Probe CUST_21931_PI390587928
- Source Contig U35_30749
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21931_PI390587928 | Hv_44K_v2 | TGGTATATATCATGTCTAATAATCCCGACGCGGTGGTTGCGCGGATCTCTGGCTGGTTGG | 310 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.239 | 1.428 | 1.299 | 1.452 | 0.491 | 0.660 |
| Raw | 4.958 | 49.003 | 41.948 | 70.017 | 7.869 | 12.645 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC30790 | 370 | 3e-25 | 311 - 370 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30749 | 370 | 3e-25 | 311 - 370 | 100 | 60 / 60 | plus |
Contig Sequence (370 bp)
>U35_30749 370 Hv_44K_v2 CAGCTCTCCAGCGACTCGGCGAGGTAAATCCACCCACCACCCGCGAGTAGTTCCCGGTGC CGTACGCCGGCGTAGCCTCGTCGCTCGGCGAATTAGGATTTGGGCGGGATCTGGCGGCGA CCCGTCCGTCTGAGCGGCGGGCCGGATCGCGGGCGCAGGGCGATCAGTTCCGGCTGTCCG GGGCAGGGGCCGATCTGGGCTCCCCCGCCCTCGGATCCAATTCGGATTTGGGAAGAATCT GCCCACCCCCAGTTGGCCGGGGACTTTGCCTGGCTAGGTGGGTGGACGGGTGAGTGCGCA GGAAGGCACGTGGTATATATCATGTCTAATAATCCCGACGCGGTGGTTGCGCGGATCTCT GGCTGGTTGG
Homology of Contig U35_30749 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |