barSeed - Barley Seed Development Database

Probe CUST_2191_PI390587928

Source Contig U35_14997

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2191_PI390587928	Hv_44K_v2	TACATTTGCCTGGTCATGGTAACTTGTGGGTTCTGCTGCTGCTTTATTGAAGATGATTGC	759	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248462.1	1567	2e-24	1478 - 1537	100	60 / 60	plus	ABC02141 ABC02142 ABC02236 ABC26778 ABC44006
JLOC1	JLOC1_24003.3	1194	8e-25	899 - 958	100	60 / 60	plus
JLOC1	JLOC1_24003.2	917	8e-25	622 - 681	100	60 / 60	plus
JLOC1	JLOC1_24003.1	1364	8e-25	1069 - 1128	100	60 / 60	plus
Harvest21	ABC02238	910	3e-25	758 - 817	100	60 / 60	plus
Harvest21	ABC02235	820	3e-25	26 - 85	100	60 / 60	minus
Harvest21	ABC02233	572	3e-25	486 - 545	100	60 / 60	plus
Harvest21	ABC02239	458	1e-24	400 - 458	100	59 / 59	plus
Harvest35	U35_14997	912	3e-25	760 - 819	100	60 / 60	plus

Contig Sequence (912 bp)

>U35_14997 912 Hv_44K_v2
CCCATCCCAGCCAGCCGTCAAAGCCAGGCACATCCAGGTCCAAGCAAAGCATCCCCAGCC
GAGACCGCGTGCGCTCCACGCAGCCGAGAGTAGTCGTCGCCGGAGAAGGGGGAGGAGGAG
GAGCGGGAGGCGACCGAGGATGTCGTGGCAGACGTACGTCGACGACCACCTGTGCTGCGA
GATCGACGGCCAGCACCTCACCTCCGCCGCCATCCTCGGCCACGACGGCAGCGTCTGGGC
CCAGTCCCCCAACTTCCCCCAGTTCAAGCCTGAGGAGATTGCTGGCATCATTAAGGACTT
TGACGAACCCGGACATCTTGCACCAACTGGTCTTTTCCTTGGAGGCACAAAATACATGGT
CATCCAAGGTGAACCTGGGGTTGTCATCCGAGGAAAGAAGGGCACCGGTGGCATTACTAT
CAAGAAGACGGGCATGGCCCTGATTCTCGGTATCTACGATGAGCCCATGACTCCTGGCCA
GTGCAATTTGGTCGTGGAGAGGCTTGGCGACTACCTGGTCGAGCAGGGTTTCTAAGCCTG
CCCTGATATGTTGTTATTTTGGTCGTCTGGGACTAAGTTTGCTCCTGTGGGCTTTGCATC
TATCTGCTTGGCGTACCGCATGATATATGCAGTGAATAATCTAGCTTGGGGTTTGTCGGT
TGGTGATGTGTCGAAGGAAAAAAATGATTTACTATGTTTTCTTTTTTAATGTTTGGCATC
GTGTCGTATCAAACTCAGCTGCTCTTTCGCTGAGTAATGTACATTTGCCTGGTCATGGTA
ACTTGTGGGTTCTGCTGCTGCTTTATTGAAGATGATTGCATTTTTAAAAAAAAAAAAAAA
AAACCTTGGCATGGTACTTGTGTCAGTTGTCTGCTAAATGAATGCTAATAATGCCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_14997 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g05880.1	132	4e-71	protein\|profilin domain containing protein, expressed
Brachypodium v1_2	Bradi1g49270.1	132	4e-64
Arabidopsis v10	AT2G19770.1	134	3e-60	\| Symbols: PRF5 \| profilin 5 \| chr2:8519885-8521119 REVERSE LENGTH=134