barSeed - Barley Seed Development Database

Probe CUST_2190_PI390587928

Source Contig U35_11005

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2190_PI390587928	Hv_44K_v2	TATTCAGAGAACAATGTCGGTGTCACGAGGTGGGAAAAGAGCAATGGAAAGCTTGCTGAT	18	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363380	1964	2e-24	42 - 101	100	60 / 60	plus	ABC14510
MLOC	MLOC_68610.1	2177	2e-24	2015 - 2074	100	60 / 60	minus	ABC14510
MLOC	MLOC_68610.2	1821	2e-24	1662 - 1721	100	60 / 60	minus	ABC14510
JLOC1	JLOC1_45403.1	2146	8e-25	2005 - 2064	100	60 / 60	minus
Harvest21	ABC23707	488	3e-25	19 - 78	100	60 / 60	plus
Harvest35	U35_11005	488	3e-25	19 - 78	100	60 / 60	plus

Contig Sequence (488 bp)

>U35_11005 488 Hv_44K_v2
AGTACATACAGATACAGGTATTCAGAGAACAATGTCGGTGTCACGAGGTGGGAAAAGAGC
AATGGAAAGCTTGCTGATGGTTCTCTCCCTCGCAGTCGTCCTCGTCCACCTCGCCGTCGG
CAGCCCTCCACCGGACCCGGTGAACTGCATGCATGGCACGTCCAACTGCACCATCACCAA
CACGTACGGCTCCTTCACGGACCGCACCATCTGCCGCGCCGCCAAGGTCACCTACCCGGG
GACCGAGCAGGAGCTGGTCGCCGCCGTGGCAGCCGTGGCGTCGACAAAACAGAAGGTGAA
GGTGGCCACCAAGCACTCCCACAGCATCCCTAAGCTGGCCTGCCCCGGCGGCGACGACGG
TACGATCATAAGCACGGCGCGGCTCAACCGGACGGTGTGCATCGATGTGGCGAAGCGGCT
CATGACGGTGGAGAGCGGCATGGTCCTCCGGGACCTGATCGAGGCCGCCGCCGCAGCAGG
GCTGTCCC

Homology of Contig U35_11005 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None