barSeed - Barley Seed Development Database

Probe CUST_21908_PI390587928

Source Contig U35_11692

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21908_PI390587928	Hv_44K_v2	TTAGGGAGTAGCTTCCTTTTTGCACAGTGTTGCAGATCAAATTAGCGGATATGGCATGGC	676	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.516	1.804	3.283	1.789	0.494	0.369
Raw	751.317	4213.570	6605.637	5641.730	556.908	449.506

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43194.2	1996	2e-24	1835 - 1894	100	60 / 60	plus	None
MLOC	MLOC_43194.1	964	2e-24	761 - 820	100	60 / 60	plus	None
JLOC1	JLOC1_27913.2	2064	8e-25	1845 - 1904	100	60 / 60	plus
JLOC1	JLOC1_27913.1	961	8e-25	742 - 801	100	60 / 60	plus
Harvest35	U35_11692	783	3e-25	677 - 736	100	60 / 60	plus

Contig Sequence (783 bp)

>U35_11692 783 Hv_44K_v2
CGCTGGCCACCGCGCTGGAGAAGCGCGGGGTGGCGCTGCCGCGGCCCAACGCGACGTGCG
ACACGGTGATCTGCTTCTGCGGCATCCGGCTCCACCAGATCGGCTCGCTCCGCTGCCCCG
CCGCGTTCGCCGTCGGCGCCGCCGCCAGGAACGCCACGCCCACCGCCGCGGTGAAGGACC
TGGAAAAGAGCTGCCGCAACGCATCCTACGCCGGCTGCTCCCGCTGCGTCCAGTCCCTGC
AAAAGGTCAAGGGGAACGTGAGCCGGGAGGTCGCCGGCGGCGACCGCGCCCGCCGGATGC
TGGGGCTGGACTGCCAGCTGATGGGCCTGACGTGGCTGCTGGCCAAGAACAAGACGGTGT
ACATCCCCACCGTGTCCGCCGTGCTGCGAGCCATGCTCTACACCGCGCACCCCACCGAGT
CCGGCAGCCACTCCAAGGTCAGCGGCGGCAGCGGCGCGGCGCCGCCGCCCCGGTGCAGCC
CGGACCAGGAGAACATGCCACTGGCCGTGGACTCGCTGCAGTTCGAGCACACCGGCAGCA
CGAGCTCGGCCGCCGTCCTGCTCCGCGGCTCCCTCCTCTGGCTGGCGTTGTACTGCTTCG
TCTGGGACGCGTTCTTGTAGACAGGGCAGTGTCGATTATGCTTGTTGATAGAGTATTTTG
TAGGAGCTGGTTGGTGTTAGGGAGTAGCTTCCTTTTTGCACAGTGTTGCAGATCAAATTA
GCGGATATGGCATGGCCACGGCCACGGCCACGAGATTACCTTGTTTAAAAAAAAAAAAAA
AAA

Homology of Contig U35_11692 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g37156.1	336	5e-88	protein\|expressed protein
Brachypodium v1_2	Bradi1g24930.1	343	6e-93
Arabidopsis v10	AT4G28100.1	304	3e-55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr4:13965300-13966697 REVERSE LENGTH=304