- Probe CUST_21903_PI390587928
- Source Contig U35_47623
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21903_PI390587928 | Hv_44K_v2 | CGAGGCGATGCGTCTCTTTGTCAAAATACTGGAGGAGGAAGATCCTGGATGGTACTCTAG | 243 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.658 | 1.034 | 1.258 | 0.872 | 0.736 | 0.566 |
| Raw | 433.613 | 375.674 | 453.294 | 427.386 | 144.568 | 123.252 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355984 | 2391 | 2e-24 | 459 - 518 | 100 | 60 / 60 | plus | ABC12861 |
| MLOC | MLOC_13532.1 | 2168 | 2e-24 | 143 - 202 | 100 | 60 / 60 | plus | ABC12861 |
| JLOC1 | JLOC1_9174.3 | 2256 | 8e-25 | 94 - 153 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9174.2 | 2270 | 8e-25 | 105 - 164 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9174.1 | 2312 | 8e-25 | 145 - 204 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48836 | 303 | 3e-25 | 244 - 303 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47623 | 303 | 3e-25 | 244 - 303 | 100 | 60 / 60 | plus |
Contig Sequence (303 bp)
>U35_47623 303 Hv_44K_v2 GGCCAGCTCCGGCATCGCCTACCCCGACCGCTTCTACGCCGCCGCGGCCTACGCCGGCTT CGGCGCCGGGGCCCCCTCCGCCGCCGCCGTCTCCCGCTTCCAGAACGACGTCGCCCTCCT CCTCTACGGCCTCCACCAGCAGGCGACGGTTGGGCCCTGCAACGTGCCCAAGCCCAGATC GTGGAGCCCCGTGGAGCAGAGCAAATGGACGAGCTGGCATGGGCTTGGGAGCATGCCGTC CGCCGAGGCGATGCGTCTCTTTGTCAAAATACTGGAGGAGGAAGATCCTGGATGGTACTC TAG
Homology of Contig U35_47623 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |