barSeed - Barley Seed Development Database

Probe CUST_21902_PI390587928

Source Contig U35_11695

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21902_PI390587928	Hv_44K_v2	TAATGTGTATGGTCCTAACCAGTTTCCTGAAAAGCTTATTCCGAAGTTCATTCTTTTTGG	825	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366489	2305	7e-23	643 - 699	100	57 / 57	plus	ABC07492 ABC07493
MLOC	MLOC_29530.2	2282	7e-23	1581 - 1637	100	57 / 57	minus	ABC07492 ABC07493
MLOC	MLOC_29530.1	2283	7e-23	1589 - 1645	100	57 / 57	minus	ABC07492 ABC07493
MLOC	MLOC_29530.4	2707	7e-23	1525 - 1581	100	57 / 57	minus	ABC07492 ABC07493
MLOC	MLOC_29530.3	2074	7e-23	1525 - 1581	100	57 / 57	minus	ABC07492 ABC07493
JLOC1	JLOC1_19645.1	2873	4e-23	741 - 797	100	57 / 57	plus
Harvest21	ABC23858	888	3e-25	826 - 885	100	60 / 60	plus
Harvest35	U35_11695	888	3e-25	826 - 885	100	60 / 60	plus

Contig Sequence (888 bp)

>U35_11695 888 Hv_44K_v2
GGCGACACCGCGTGAGCGCCTTTCCCCACCACCTTCCCCACCACCTTCCCCGTCGTGCTT
TCCGCCGACCCCCATTATCTCGCTCTCACGCACGCACACCGACACCGCCACCGCCACCAC
CACCACCACCGCCGCCATTTCTCCATTTATTGACGGCAAGCCCCCCTCCCCGCTCTCCCC
CGTCGACCGACGCCACCGCCCCTCCCCCTCCCCCTCCCCTCCGCCGCGTGCTGCCTACGG
ATTCCAGAAATTACAGTCCGATATGGCGACACCCTACACACCTAAGAGCATCCTCATTAC
AGGAGCTGCTGGTTTCATCGCTTCCCATGTCACAAACCGCATTGTACGGAACTACCCTGA
TTACAAGATTGTCGTCCTTGACAAGCTTGATTACTGCTCCAATCTGAAGAACCTTCTCCC
TGCCAGCTCGTCACCGAACTTCAAGTTTGTCAAGGGCGATATTGCAAGTGCTGATCTTGT
CAACTTCCTCCTGGTCACAGAGAACATCGATACAATAATGCACTTTGCAGCCCAGACACA
TGTTGACAATTCTTTTGGTAACTCCTTTGAATTCACCAAGAACAACATTTACGGTACTCA
TGTTCTTCTTGAAGCTTGCAAGGTCACTGGGCAGATCAGGAGGTTCATCCACGTTAGCAC
TGATGAGGTCTATGGCGAGACTGATGAGGATGCAGTGGTTGGCAACCATGAGGCCTCACA
GCTGCTCCCCACAAATCCTTATTCAGCCACCAAAGCTGGAGCAGAGATGCTTGTCATGGC
TTATGGGAGATCCTATGGTCTGCCGGTCATTACTACCCGGGGAAATAATGTGTATGGTCC
TAACCAGTTTCCTGAAAAGCTTATTCCGAAGTTCATTCTTTTTGGCTA

Homology of Contig U35_11695 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g17000.4	546	2e-129	protein\|NAD dependent epimerase/dehydratase family domain containing protein, expressed
Brachypodium v1_2	Bradi3g08850.2	531	7e-143
Arabidopsis v10	AT3G14790.1	664	1e-130	\| Symbols: RHM3, ATRHM3 \| rhamnose biosynthesis 3 \| chr3:4964791-4966875 FORWARD LENGTH=664