barSeed - Barley Seed Development Database

Probe CUST_21898_PI390587928

Source Contig U35_23670

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21898_PI390587928	Hv_44K_v2	AAGGCCAACGCGAGGCCGGCCAGGGACAGGAAGGCTCGCCCGGTGGCGGAAGAAGAGGCG	211	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355682	1077	2e-24	221 - 280	100	60 / 60	plus	ABC26142
MLOC	MLOC_71155.2	802	7e-23	537 - 596	98	59 / 60	minus	None
MLOC	MLOC_71155.1	5363	7e-23	5064 - 5123	98	59 / 60	minus	ABC26142
JLOC1	JLOC1_47256.1	3279	4e-23	234 - 293	98	59 / 60	plus
Harvest21	ABC19365	270	1e-24	212 - 270	100	59 / 59	plus
Harvest35	U35_23670	271	3e-25	212 - 271	100	60 / 60	plus

Contig Sequence (271 bp)

>U35_23670 271 Hv_44K_v2
GCTCATGTTGCGGGCCGCCACCGCGAGGGCGGCGTCCACGGTCGCCGCCGGCGCCAGGAG
GAGACCCGGCCTCCTGCCCGTCGCCGTGGCCGGCCTCTCGTCCTCCTCGTCAGGACCACC
ACCATCGGGTGGGAAGAGGAGGAAGGGCCAGCGGCGGGGCGAGGCCAATCCCCACCCCCA
GCCCCAGCCCTATGAGATCGCCAGCAACAAGAAGGCCAACGCGAGGCCGGCCAGGGACAG
GAAGGCTCGCCCGGTGGCGGAAGAAGAGGCG

Homology of Contig U35_23670 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None