- Probe CUST_21880_PI390587928
- Source Contig U35_47636
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_21880_PI390587928 | Hv_44K_v2 | TGAACACCCTCGACCGGAAGCTCTTCTATATACGACGTTCAAGATCTACCGCGGCGTCGC | 277 | GeneList: lightcyan MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.927 | 1.178 | 1.823 | 1.838 | 0.500 | 0.554 |
Raw | 146.587 | 299.312 | 395.930 | 627.250 | 60.509 | 72.488 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK373372 | 1316 | 2e-24 | 786 - 845 | 100 | 60 / 60 | plus | ABC06502 |
MLOC | MLOC_27413.1 | 775 | 2e-24 | 149 - 208 | 100 | 60 / 60 | minus | ABC06502 |
Harvest21 | ABC48859 | 427 | 3e-25 | 278 - 337 | 100 | 60 / 60 | plus | |
Harvest35 | U35_47636 | 427 | 3e-25 | 278 - 337 | 100 | 60 / 60 | plus |
Contig Sequence (427 bp)
>U35_47636 427 Hv_44K_v2 CGCGCCACGGCCTCAGGTGCACGATTCAGCGCGGAGGAAGGGGCGGAGAAAGGCAAATCT CCCAATCCGCGGGAGCCATCGGCTGGCTCCGATTCAGCGCCAACGGGGACTGTAGCGGGG AGCATTCTTCCCTGTGGCTCAGTCGAGGCGCTCGAGGAAGGGGCAGTCAAGGCGCTCAAG GCGCTCAAGATCGAGGTTGGCGCGGCCACGCGCAGGCTGCAGGCCTCCGTCTGGTCCGGC GGCGGCGCCGCACGGGAGGAGATGCGATAGAAAGTGGTGAACACCCTCGACCGGAAGCTC TTCTATATACGACGTTCAAGATCTACCGCGGCGTCGCCGGCCTGTACGACTACGGGTCGT CGGGGTGTGCGGTCAAGTCCAACGTCCTGGCCTTCTGGAGGCAGGTGAGCGAGGCTGCCA GCCCATC
Homology of Contig U35_47636 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |