- Probe CUST_21880_PI390587928
- Source Contig U35_47636
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21880_PI390587928 | Hv_44K_v2 | TGAACACCCTCGACCGGAAGCTCTTCTATATACGACGTTCAAGATCTACCGCGGCGTCGC | 277 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.927 | 1.178 | 1.823 | 1.838 | 0.500 | 0.554 |
| Raw | 146.587 | 299.312 | 395.930 | 627.250 | 60.509 | 72.488 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373372 | 1316 | 2e-24 | 786 - 845 | 100 | 60 / 60 | plus | ABC06502 |
| MLOC | MLOC_27413.1 | 775 | 2e-24 | 149 - 208 | 100 | 60 / 60 | minus | ABC06502 |
| Harvest21 | ABC48859 | 427 | 3e-25 | 278 - 337 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47636 | 427 | 3e-25 | 278 - 337 | 100 | 60 / 60 | plus |
Contig Sequence (427 bp)
>U35_47636 427 Hv_44K_v2 CGCGCCACGGCCTCAGGTGCACGATTCAGCGCGGAGGAAGGGGCGGAGAAAGGCAAATCT CCCAATCCGCGGGAGCCATCGGCTGGCTCCGATTCAGCGCCAACGGGGACTGTAGCGGGG AGCATTCTTCCCTGTGGCTCAGTCGAGGCGCTCGAGGAAGGGGCAGTCAAGGCGCTCAAG GCGCTCAAGATCGAGGTTGGCGCGGCCACGCGCAGGCTGCAGGCCTCCGTCTGGTCCGGC GGCGGCGCCGCACGGGAGGAGATGCGATAGAAAGTGGTGAACACCCTCGACCGGAAGCTC TTCTATATACGACGTTCAAGATCTACCGCGGCGTCGCCGGCCTGTACGACTACGGGTCGT CGGGGTGTGCGGTCAAGTCCAACGTCCTGGCCTTCTGGAGGCAGGTGAGCGAGGCTGCCA GCCCATC
Homology of Contig U35_47636 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |