- Probe CUST_21876_PI390587928
- Source Contig U35_23681
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21876_PI390587928 | Hv_44K_v2 | GAGCTTGTATCAGTTATTACACTTGTAGAGCTTGTAAAGTACAACTTGTATTACGTGTCA | 675 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_77905.5 | 2842 | 2e-24 | 69 - 128 | 100 | 60 / 60 | minus | ABC20013 ABC49829 |
| MLOC | MLOC_77905.8 | 1901 | 2e-24 | 39 - 98 | 100 | 60 / 60 | minus | ABC20013 ABC32895 ABC49829 |
| MLOC | MLOC_77905.9 | 2720 | 2e-24 | 39 - 98 | 100 | 60 / 60 | minus | ABC20013 ABC49829 |
| MLOC | MLOC_77905.10 | 1791 | 2e-24 | 22 - 81 | 100 | 60 / 60 | minus | ABC20013 ABC49829 |
| MLOC | MLOC_77905.12 | 1711 | 2e-24 | 4 - 63 | 100 | 60 / 60 | minus | ABC20013 ABC32895 ABC49829 |
| MLOC | MLOC_77905.2 | 2672 | 2e-24 | 92 - 151 | 100 | 60 / 60 | minus | ABC20013 ABC32895 ABC49829 |
| MLOC | MLOC_77905.11 | 811 | 2e-24 | 16 - 75 | 100 | 60 / 60 | minus | ABC20013 ABC32895 ABC49829 |
| MLOC | MLOC_77905.1 | 950 | 2e-24 | 92 - 151 | 100 | 60 / 60 | minus | ABC20013 ABC32895 ABC49829 |
| MLOC | MLOC_77905.6 | 1675 | 2e-24 | 69 - 128 | 100 | 60 / 60 | minus | ABC20013 ABC32895 ABC49829 |
| MLOC | MLOC_77905.7 | 1769 | 2e-24 | 69 - 128 | 100 | 60 / 60 | minus | ABC20013 ABC32895 ABC49829 |
| MLOC | MLOC_77905.3 | 1760 | 2e-24 | 92 - 151 | 100 | 60 / 60 | minus | ABC20013 ABC32895 ABC49829 |
| MLOC | MLOC_77905.4 | 1862 | 2e-24 | 92 - 151 | 100 | 60 / 60 | minus | ABC20013 ABC32895 ABC49829 |
| JLOC1 | JLOC1_51923.10 | 1065 | 8e-25 | 910 - 969 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51923.9 | 1945 | 8e-25 | 1790 - 1849 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51923.8 | 1810 | 8e-25 | 1655 - 1714 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51923.7 | 987 | 8e-25 | 832 - 891 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51923.6 | 2707 | 8e-25 | 2552 - 2611 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51923.5 | 1733 | 8e-25 | 1578 - 1637 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51923.4 | 923 | 8e-25 | 768 - 827 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51923.3 | 1826 | 8e-25 | 1671 - 1730 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51923.2 | 2272 | 8e-25 | 2117 - 2176 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51923.1 | 1451 | 8e-25 | 1296 - 1355 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC20013 | 771 | 3e-25 | 676 - 735 | 100 | 60 / 60 | plus | ABC20013 |
| Harvest21 | ABC49829 | 718 | 8e-21 | 20 - 82 | 95 | 60 / 63 | minus | ABC49829 |
| Harvest35 | U35_23681 | 771 | 3e-25 | 676 - 735 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_48277 | 718 | 8e-21 | 20 - 82 | 95 | 60 / 63 | minus |
Contig Sequence (771 bp)
>U35_23681 771 Hv_44K_v2 CCCGCGACTCCTCCTCCTCCGCCGCCACCTTCGCCACCCCGAGCGACGTGGCGGTCGATG CCTCCTCCCCCTCCTCGCCGTCGCCCCTACCCCTTGCAGCGCCCCTCGGGCGGCCCCAGG AAGAGCGGAACCGCGGGCAGGCGGGAGGGTCCTGCTTCGCTGCGGCTGTGGGGGTCGACC AGACGGGCAAGAACTCACTTCCCCATGCCCAGTTCCTTTTTCGGAGCCTTCATCTCCGAG CTCCTCCAGAAGCAGCCCCGACGGCCCCGACGCCGCGGCCACCGGAGTCGGGGCGTTCGA CAGCAGGGCGGTGTTCAAGCAGCTGGTACGGGAGCAGACGACCGTCAAGGAGGCGGGTGG ACCGTCGGCCGAGGGCGCGGACAGGAAGAAGAAGCCGGAGGAGGCGCAGGTGAAATCGTC GCACGCCGTAGAGCTTGTCATTCATGCTGGCAAGTTCTGAAATGAGTTTGGCAAATCGGT TAAGCTGGGAATCATTGAAGATGCAACAAACAGGAACCGTCTTGCGAAGCTTCTCAGATT TGAGAGGATGACCGTGGAAGGCACAGTCTTGACTATGGCCCTCCAGTGACTTCGGCATTT GATCGCTATCGAAGGAGCTCCATGCTGAAGTAGAAAACACTTGTAGAGCTTGTAATCGTG ATTCCCATACTTGTAGAGCTTGTATCAGTTATTACACTTGTAGAGCTTGTAAAGTACAAC TTGTATTACGTGTCATTTATAAAGCCTATATTATGTGTCAAAAAAAAAAAA
Homology of Contig U35_23681 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |